InParanoid 6: eukaryotic ortholog clusters with inparalogs. - Ann-Charlotte Berglund; Erik Sjölund; Gabriel Östlund; Erik L. L. Sonnhammer (Nucleic Acids Res., 2008)

A Global Structural EM Algorithm for a Model of Cancer Progression. - Ali Tofigh; Erik Sjölund; Mattias Höglund; Jens Lagergren (NIPS, 2011)

fastphylo: Fast tools for phylogenetics. - Mehmood Alam Khan; Isaac Elias; Erik Sjölund; Kristina Nylander; Roman Valls Guimera; Richard Schobesberger; Peter Schmitzberger; Jens Lagergren; Lars Arvestad (BMC Bioinform., 2013)

MaxLink: network-based prioritization of genes tightly linked to a disease seed set. - Dimitri Guala; Erik Sjölund; Erik L. L. Sonnhammer (Bioinform., 2014)