Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis. - Sepideh Babaei; Erik van den Akker 001; Jeroen de Ridder; Marcel J. T. Reinders (PRIB, 2011)

Integrating Protein-Protein Interaction Networks with Gene-Gene Co-Expression Networks improves Gene Signatures for Classifying Breast Cancer Metastasis. - Erik van den Akker 001; Bas Verbruggen; Bas T. Heijmans; Marian Beekman; Joost N. Kok; Pieternella E. Slagboom; Marcel J. T. Reinders (J. Integr. Bioinform., 2011)

ImSpectR: R package to quantify immune repertoire diversity in spectratype and repertoire sequencing data. - Martijn Cordes; Karin Pike-Overzet; Marja van Eggermond; Sandra Vloemans; Miranda R. Baert; Laura Garcia-Perez; Frank J. T. Staal; Marcel J. T. Reinders; Erik van den Akker 001 (Bioinform., 2020)

MiMIR: R-shiny application to infer risk factors and endpoints from Nightingale Health's 1H-NMR metabolomics data. - Daniele Bizzarri; Marcel J. T. Reinders; Marian Beekman; P. Eline Slagboom; Erik van den Akker 001 (Bioinform., 2022)

A framework for employing longitudinally collected multicenter electronic health records to stratify heterogeneous patient populations on disease history. - Marc P. Maurits; Ilya Korsunsky; Soumya Raychaudhuri; Shawn N. Murphy; Jordan W. Smoller; Scott T. Weiss; Thomas W. J. Huizinga; Marcel J. T. Reinders; Elizabeth W. Karlson; Erik van den Akker 001; Rachel Knevel (J. Am. Medical Informatics Assoc., 2022)

Improving musculoskeletal care with AI enhanced triage through data driven screening of referral letters. - Tjardo Daniël Maarseveen; Herman Kasper Glas; Josien Veris-van Dieren; Erik van den Akker 001; Rachel Knevel (npj Digit. Medicine, 2025)