Electron density deformations provide new insights into the spectral shift of rhodopsins. - Erix Wiliam Hernández-Rodríguez; Ana Lilian Montero-Alejo; Rafael López; Elsa Sánchez-García; Luis Alberto Montero-Cabrera; José Manuel García de la Vega (J. Comput. Chem., 2013)

Multi-scale simulation reveals that an amino acid substitution increases photosensitizing reaction inputs in Rhodopsins. - Erix Wiliam Hernández-Rodríguez; Andrés M. Escorcia; Marc van der Kamp; Ana Lilian Montero-Alejo; Julio Caballero (J. Comput. Chem., 2020)

BitClust: Fast Geometrical Clustering of Long Molecular Dynamics Simulations. - Roy González-Alemán; David Hernández-Castillo; Alejandro Rodríguez-Serradet; Julio Caballero; Erix Wiliam Hernández-Rodríguez; Luis Alberto Montero-Cabrera (J. Chem. Inf. Model., 2020)

BitQT: a graph-based approach to the quality threshold clustering of molecular dynamics. - Roy González-Alemán; Daniel Platero-Rochart; David Hernández-Castillo; Erix Wiliam Hernández-Rodríguez; Julio Caballero; Fabrice Leclerc; Luis Alberto Montero-Cabrera (Bioinform., 2021)

RCDPeaks: memory-efficient density peaks clustering of long molecular dynamics. - Daniel Platero-Rochart; Roy González-Alemán; Erix Wiliam Hernández-Rodríguez; Fabrice Leclerc; Julio Caballero; Luis Alberto Montero-Cabrera (Bioinform., 2022)

Structural Insights into the Inhibition Site in the Phosphorylcholine Phosphatase Enzyme of Pseudomonas aeruginosa. - Daniel Bustos; Erix Wiliam Hernández-Rodríguez; Horacio Poblete; Jans H. Alzate-Morales; Cecilia Challier; Cristhian Boetsch; Ariela Vergara Jaque; Paola Beassoni (J. Chem. Inf. Model., 2022)

MDSCAN: RMSD-based HDBSCAN clustering of long molecular dynamics. - Roy González-Alemán; Daniel Platero-Rochart; Alejandro Rodríguez-Serradet; Erix Wiliam Hernández-Rodríguez; Julio Caballero; Fabrice Leclerc; Luis Alberto Montero-Cabrera (Bioinform., 2022)

Moltiverse: Molecular Conformer Generation Using Enhanced Sampling Methods. - Mauricio Bedoya; Francisco Adasme-Carreño; Paula Andrea Peña-Martínez; Camila Muñoz-Gutiérrez; Luciano Peña-Tejo; José C. E. Márquez Montesinos; Erix Wiliam Hernández-Rodríguez; Wendy González; Leandro Martínez; Jans H. Alzate-Morales (J. Chem. Inf. Model., 2025)