Querying a Database of regulatory Elements. - Chengyong Yang; Erliang Zeng; Kalai Mathee; Giri Narasimhan (Advances in Bioinformatics and Its Applications, 2005)

Clustering Genes Using Gene Expression and Text Literature Data. - Chengyong Yang; Erliang Zeng; Tao Li 001; Giri Narasimhan (CSB, 2005)

A Knowledge-Driven Method to Evaluate Multi-source Clustering. - Chengyong Yang; Erliang Zeng; Tao Li 001; Giri Narasimhan (ISPA Workshops, 2005)

On the Effectiveness of Constraints Sets in Clustering Genes. - Erliang Zeng; Chengyong Yang; Tao Li 001; Giri Narasimhan (BIBE, 2007)

Enhancing Motif Refinement by Incorporating Comparative Genomics Data. - Erliang Zeng; Giri Narasimhan (ISBRA, 2007)

A Functional Network of Yeast Genes Using Gene Ontology Information. - Erliang Zeng; Giri Narasimhan; Lisa Schneper; Kalai Mathee (BIBM, 2008)

Weighted Consensus Clustering for Identifying Functional Modules in Protein-Protein Interaction Networks. - Yi Zhang 005; Erliang Zeng; Tao Li 001; Giri Narasimhan (ICMLA, 2009)

A two-stage machine learning approach for pathway analysis. - Wei Zhang 175; Scott J. Emrich; Erliang Zeng (BIBM, 2010)

Clustering Genes Using Heterogeneous Data Sources. - Erliang Zeng; Chengyong Yang; Tao Li 001; Giri Narasimhan (Int. J. Knowl. Discov. Bioinform., 2010)

A machine learning framework for trait based genomics. - Wei Zhang 175; Erliang Zeng; Dan Liu; Stuart E. Jones; Scott J. Emrich (ICCABS, 2012)

Combining Gene Expression Profiles and Protein-Protein Interactions for Identifying Functional Modules. - Dingding Wang 001; Mitsunori Ogihara; Erliang Zeng; Tao Li 001 (ICMLA (1), 2012)

Predicting bacterial functional traits from whole genome sequences using random forest. - Wei Zhang 175; Erliang Zeng; Scott J. Emrich; Joshua Livermore; Dan Liu; Stuart E. Jones (ICCABS, 2013)

Mapping genomic features to functional traits through microbial whole genome sequences. - Wei Zhang 175; Erliang Zeng; Dan Liu; Stuart E. Jones; Scott J. Emrich (Int. J. Bioinform. Res. Appl., 2014)

De novo genome assembly tool comparison for highly heterozygous species Vitis vinifera cv. Sultanina. - Sagar Patel; Padmapriya Swaminathan; Anne Fennell; Erliang Zeng (BIBM, 2015)

A computational framework for integrative analysis of large microbial genomics data. - Erliang Zeng; Wei Zhang 175; Scott J. Emrich; Dan Liu; Joshua Livermore; Stuart E. Jones (BIBM, 2015)

A generic bioinformatics pipeline to integrate large-scale trait data with large phylogenies. - Pasan C. Fernando; Laura M. Jackson; Erliang Zeng; Paula M. Mabee; James P. Balhoff (BIBM, 2017)

Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities. - Pasan C. Fernando; Paula M. Mabee; Erliang Zeng (BMC Bioinform., 2020)

The Iowa Health Data Resource (IHDR): an innovative framework for transforming the clinical health data ecosystem. - Heath A. Davis; Donna A. Santillan; Chris E. Ortman; Asher A. Hoberg; Joseph P. Hetrick; Charles W. McBrearty; Erliang Zeng; Mary S. Vaughan Sarrazin; Karen Dunn Lopez; Cole G. Chapman; Ryan M. Carnahan; Jacob J. Michaelson; et al. (J. Am. Medical Informatics Assoc., 2024)