Quantitative in vivo imaging to enable tumor forecasting and treatment optimization. - Guillermo Lorenzo; David A. Hormuth II; Angela M. Jarrett; Ernesto A. B. F. Lima; Shashank Subramanian; George Biros; J. Tinsley Oden; Thomas J. R. Hughes; Thomas E. Yankeelov (CoRR, 2021)

Bayesian calibration of a stochastic, multiscale agent-based model for predicting in vitro tumor growth. - Ernesto A. B. F. Lima; Danial Faghihi; Russell Philley; Jianchen Yang; John Virostko; Caleb M. Phillips; Thomas E. Yankeelov (PLoS Comput. Biol., 2021)

Perspectives and Experiences Supporting Containers for Research Computing at the Texas Advanced Computing Center. - Erik S. Ferlanti; William J. Allen; Ernesto A. B. F. Lima; Yinzhi Wang; John M. Fonner (SC Workshops, 2023)

Towards integration of time-resolved confocal microscopy of a 3D in vitro microfluidic platform with a hybrid multiscale model of tumor angiogenesis. - Caleb M. Phillips; Ernesto A. B. F. Lima; Manasa Gadde; Angela M. Jarrett; Marissa Nichole Rylander; Thomas E. Yankeelov (PLoS Comput. Biol., 2023)

Predictive digital twin for optimizing patient-specific radiotherapy regimens under uncertainty in high-grade gliomas. - Anirban Chaudhuri; Graham Pash; David A. Hormuth; Guillermo Lorenzo; Michael G. Kapteyn; Chengyue Wu; Ernesto A. B. F. Lima; Thomas E. Yankeelov; Karen Willcox (Frontiers Artif. Intell., 2023)

Assessing the identifiability of model selection frameworks for the prediction of patient outcomes in the clinical breast cancer setting. - Caleb M. Phillips; Ernesto A. B. F. Lima; Chengyue Wu; Angela M. Jarrett; Z. Zhou; N. Elshafeey; J. Ma; Greta Rauch; Thomas E. Yankeelov (J. Comput. Sci., 2023)

MRI-based digital twins to improve treatment response of breast cancer by optimizing neoadjuvant chemotherapy regimens. - Chengyue Wu; Ernesto A. B. F. Lima; Casey E. Stowers; Zhan Xu; Clinton Yam; Jong Bum Son; Jingfei Ma; Gaiane M. Rauch; Thomas E. Yankeelov (npj Digit. Medicine, 2025)

Validating the predictions of mathematical models describing tumor growth and treatment response. - Guillermo Lorenzo; David A. Hormuth II; Chengyue Wu; Graham Pash; Anirban Chaudhuri; Ernesto A. B. F. Lima; Lois C. Okereke; Reshmi Patel; Karen Willcox; Thomas E. Yankeelov (CoRR, 2025)

TumorTwin: A python framework for patient-specific digital twins in oncology. - Michael G. Kapteyn; Anirban Chaudhuri; Ernesto A. B. F. Lima; Graham Pash; Rafael Bravo; Karen Willcox; Thomas E. Yankeelov; David A. Hormuth II (CoRR, 2025)