QuBiLS-MIDAS: A parallel free-software for molecular descriptors computation based on multilinear algebraic maps. - César R. García-Jacas; Yovani Marrero-Ponce; Liesner Acevedo-Martínez; Stephen J. Barigye; José R. Valdés-Martiní; Ernesto Contreras-Torres (J. Comput. Chem., 2014)

Examining the predictive accuracy of the novel 3D N-linear algebraic molecular codifications on benchmark datasets. - César R. García-Jacas; Ernesto Contreras-Torres; Yovani Marrero-Ponce; Mario Pupo-Meriño; Stephen J. Barigye; Lisset Cabrera-Leyva (J. Cheminformatics, 2016)

MuLiMs-MCoMPAs: A Novel Multiplatform Framework to Compute Tensor Algebra-Based Three-Dimensional Protein Descriptors. - Ernesto Contreras-Torres; Yovani Marrero-Ponce; Julio E. Terán; César R. García-Jacas; Carlos A. Brizuela; Juan Carlos Sánchez-Rodríguez (J. Chem. Inf. Model., 2020)

On the Use of Second Order Neighbors to Escape from Local Optima. - Manuel Torralbo; Leticia Hernando; Ernesto Contreras-Torres; José Antonio Lozano 001 (GECCO, 2023)

MD-LAIs Software: Computing Whole-Sequence and Amino Acid-Level "Embeddings" for Peptides and Proteins. - Ernesto Contreras-Torres; Yovani Marrero-Ponce (J. Chem. Inf. Model., 2024)

Rethinking the applicability domain analysis in QSAR models. - José Ramón Mora; Edgar Márquez; Noel Pérez-Pérez; Ernesto Contreras-Torres; Yunierkis Pérez-Castillo; Guillermín Agüero-Chapín; Felix Martinez-Rios; Yovani Marrero-Ponce; Stephen J. Barigye (J. Comput. Aided Mol. Des., 2024)