The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation. - Sandra N. Loevenich; Erich Brunner; Nichole L. King; Eric W. Deutsch; Stephen E. Stein; Ruedi Aebersold; Ernst Hafen (BMC Bioinform., 2009)

Governance and IT Architecture. - Serge Bignens; Murat Sariyar; Ernst Hafen (Applied Data Science, 2019)

The Impact of Prior Knowledge in Narrative-Based Learning on Understanding Biological Concepts in Higher Education. - Samuel Tobler; Tanmay Sinha; Katja Köhler; Ernst Hafen; Manu Kapur (CogSci, 2022)