Navigation and Interaction in a Multi-Scale Stereoscopic Environment. - Ernst Houtgast; Onno Pfeiffer; Zachary Wartell; William Ribarsky; Frits H. Post (VR, 2005)

Interaction Volume Management in a Multi-scale Virtual Environment. - Zachary Wartell; Ernst Houtgast; Onno Pfeiffer; Christopher D. Shaw; William Ribarsky; Frits H. Post (Advances in Information and Intelligent Systems, 2009)

Scaling HMMER Performance on Multicore Architectures. - Sebastián Isaza; Ernst Houtgast; Friman Sánchez; Alex Ramírez; Georgi Gaydadjiev (CISIS, 2011)

HMMER Performance Model for Multicore Architectures. - Sebastián Isaza; Ernst Houtgast; Georgi Gaydadjiev (DSD, 2011)

Heterogeneous Hardware/Software Acceleration of the BWA-MEM DNA Alignment Algorithm. - Nauman Ahmed; Vlad Mihai Sima; Ernst Houtgast; Koen Bertels; Zaid Al-Ars (ICCAD, 2015)

An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm. - Ernst Joachim Houtgast; Vlad Mihai Sima; Koen Bertels; Zaid Al-Ars (SAMOS, 2015)

GPU-Accelerated BWA-MEM Genomic Mapping Algorithm Using Adaptive Load Balancing. - Ernst Joachim Houtgast; Vlad Mihai Sima; Koen Bertels; Zaid Al-Ars (ARCS, 2016)

Power-Efficient Accelerated Genomic Short Read Mapping on Heterogeneous Computing Platforms. - Ernst Joachim Houtgast; Vlad Mihai Sima; Giacomo Marchiori; Koen Bertels; Zaid Al-Ars (FCCM, 2016)

Power-efficiency analysis of accelerated BWA-MEM implementations on heterogeneous computing platforms. - Ernst Joachim Houtgast; Vlad Mihai Sima; Giacomo Marchiori; Koen Bertels; Zaid Al-Ars (ReConFig, 2016)

An Efficient GPUAccelerated Implementation of Genomic Short Read Mapping with BWAMEM. - Ernst Joachim Houtgast; Vlad Mihai Sima; Koen Bertels; Zaid Al-Ars (SIGARCH Comput. Archit. News, 2016)

High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL. - Ernst Houtgast; Vlad Mihai Sima; Zaid Al-Ars (BIBE, 2017)

Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM. - Ernst Joachim Houtgast; Vlad Mihai Sima; Koen Bertels; Zaid Al-Ars (BIBE, 2018)

Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths. - Ernst Joachim Houtgast; Vlad Mihai Sima; Koen Bertels; Zaid Al-Ars (Comput. Biol. Chem., 2018)

On Hardware-Accelerated Maximally-Efficient Systolic Arrays: Acceleration and Optimization of Genomics Pipelines Through Hardware/Software Co-Design. - Ernst Joachim Houtgast (2019)