Statistical Adjustment of Signal Censoring in Gene Expression Experiments. - Ernst Wit; John McClure (Bioinform., 2003)

Weighted analysis of microarray gene expression using maximum-likelihood. - David J. Bakewell; Ernst Wit (Bioinform., 2005)

An experimental evaluation of a loop versus a reference design for two-channel microarrays. - Veronica Vinciotti; Raya Khanin; Davide D'Alimonte; Xiaohui Liu 001; N. Cattini; G. Hotchkiss; Giselda Bucca; O. de Jesus; J. Rasaiyaah; Colin P. Smith; Paul Kellam; Ernst Wit (Bioinform., 2005)

Computational inference of regulator activity in a single input motif from gene expression data. - Raya Khanin; Veronica Vinciotti; Vassilis Mersinias; Colin P. Smith; Ernst Wit (BMC Bioinform., 2005)

How Scale-Free Are Biological Networks. - Raya Khanin; Ernst Wit (J. Comput. Biol., 2006)

Exact and Approximate Stochastic Simulations of the MAPK Pathway and Comparisons of Simulations Results. - Vilda Purutçuoglu; Ernst Wit (J. Integr. Bioinform., 2006)

A global statistical test for improved detection of gene activity. - David J. Bakewell; Ernst Wit (BMC Syst. Biol., 2007)

Bayesian inference of the kinetic parameters of a realistic MAPK/ERK pathway. - Vilda Purutçuoglu; Ernst Wit (BMC Syst. Biol., 2007)

Identifying Variables Responsible for Clustering in Discriminant Analysis of Data from Infrared Microspectroscopy of a Biological Sample. - Francis L. Martin; Matthew J. German; Ernst Wit; Thomas Fearn; Narasimhan Ragavan; Hubert M. Pollock (J. Comput. Biol., 2007)

Test the Overall Significance of p-values by Using Joint Tail Probability of Ordered p-values as Test Statistic. - Yongxiang Fang; Ernst Wit (ADMA, 2008)

Probabilistic relabelling strategies for the label switching problem in Bayesian mixture models. - Matthew Sperrin; Thomas Jaki; Ernst Wit (Stat. Comput., 2010)

Borrowing strength: a likelihood ratio test for related sparse signals. - Ernst Wit; David J. Bakewell (Bioinform., 2012)

Dynamic Gaussian Graphical Models for Modelling Genomic Networks. - Antonio Abbruzzo; Clelia Di Serio; Ernst Wit (CIBB, 2013)

Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data. - Yanchun Bao; Veronica Vinciotti; Ernst Wit; Peter A. C. 't Hoen (BMC Bioinform., 2013)

High dimensional Sparse Gaussian Graphical Mixture Model. - Anani Lotsi; Ernst Wit (CoRR, 2013)

Using mixture of Gamma distributions for Bayesian analysis in an M/G/1 queue with optional second service. - Abdolreza Mohammadi 002; Mohammad Reza Salehi Rad; Ernst C. Wit (Comput. Stat., 2013)

Reproducing kernel Hilbert space based estimation of systems of ordinary differential equations. - Javier González 002; Ivan Vujacic; Ernst Wit (Pattern Recognit. Lett., 2014)

Inferring slowly-changing dynamic gene-regulatory networks. - Ernst C. Wit; Antonino Abbruzzo (BMC Bioinform., 2015)

Factorial graphical models for dynamic networks. - Ernst Wit; Antonino Abbruzzo (Netw. Sci., 2015)

Time-course window estimator for ordinary differential equations linear in the parameters. - Ivan Vujacic; Itai Dattner; Javier González 002; Ernst Wit (Stat. Comput., 2015)

NEAT: an efficient network enrichment analysis test. - Mirko Signorelli; Veronica Vinciotti; Ernst C. Wit (BMC Bioinform., 2016)

Consistency of biological networks inferred from microarray and sequencing data. - Veronica Vinciotti; Ernst C. Wit; Rick Jansen; Eco J. C. de Geus; Brenda W. J. H. Penninx; Dorret I. Boomsma; Peter A. C. 't Hoen (BMC Bioinform., 2016)

A penalized inference approach to stochastic blockmodelling of community structure in the Italian Parliament. - Mirko Signorelli; Ernst C. Wit (CoRR, 2016)

Extended differential geometric LARS for high-dimensional GLMs with general dispersion parameter. - Hassan Pazira; Luigi Augugliaro; Ernst Wit (Stat. Comput., 2018)

Penalized inference of the hematopoietic cell differentiation network via high-dimensional clonal tracking. - Danilo Pellin; Luca Biasco; Alessandro Aiuti; Clelia Di Serio; Ernst C. Wit (Appl. Netw. Sci., 2019)

De novo construction of polyploid linkage maps using discrete graphical models. - Pariya Behrouzi; Ernst C. Wit (Bioinform., 2019)

Selecting the tuning parameter in penalized Gaussian graphical models. - Antonino Abbruzzo; Ivan Vujacic; Angelo M. Mineo; Ernst C. Wit (Stat. Comput., 2019)

mudfold: An R Package for Nonparametric IRT Modelling of Unfolding Processes. - E. Balafas Spyros; Wim P. Krijnen; Wendy J. Post; Ernst C. Wit (R J., 2020)

Test for triadic closure and triadic protection in temporal relational event data. - Ruta Uzupyte; Ernst C. Wit (Soc. Netw. Anal. Min., 2020)

Bistability in fatty-acid oxidation resulting from substrate inhibition. - Fentaw Abegaz; Anne-Claire M. F. Martines; Marcel A. Vieira-Lara; Melany Rios-Morales; Dirk-Jan Reijngoud; Ernst C. Wit; Barbara M. Bakker (PLoS Comput. Biol., 2021)

A Software Tool For Sparse Estimation Of A General Class Of High-dimensional GLMs. - Hassan Pazira; Luigi Augugliaro; Ernst C. Wit (R J., 2022)

Non-parametric estimation of reciprocity and triadic effects in relational event networks. - Ruta Juozaitiene; Ernst C. Wit (Soc. Networks, 2022)

Estimating Parameters of 3D Cell Model Using a Bayesian Recursive Global Optimizer (BaRGO). - Pietro Miotti; Edoardo Filippi-Mazzola; Ernst C. Wit; Igor V. Pivkin (ICCS (3), 2023)

Fast inference of latent space dynamics in huge relational event networks. - Igor Artico; Ernst Wit (CoRR, 2023)

cglasso: An R Package for Conditional Graphical Lasso Inference with Censored and Missing Values. - Luigi Augugliaro; Gianluca Sottile; Ernst C. Wit; Veronica Vinciotti (J. Stat. Softw., 2023)

netgwas: An R Package for Network-Based Genome Wide Association Studies. - Pariya Behrouzi; Danny Arends; Ernst C. Wit (R J., 2023)

Scalable inference of cell differentiation networks in gene therapy clonal tracking studies of haematopoiesis. - Luca Del Core; Danilo Pellin; Ernst C. Wit; Marco Grzegorczyk (Bioinform., 2023)

A mixed-effects stochastic model reveals clonal dominance in gene therapy safety studies. - Luca Del Core; Danilo Pellin; Ernst C. Wit; Marco Grzegorczyk (BMC Bioinform., 2023)

Analyzing non-linear network effects in the European interbank market. - Edoardo Filippi-Mazzola; Federica Bianchi; Ernst C. Wit (SDS, 2024)

Latent event history models for quasi-reaction systems. - Matteo Framba; Veronica Vinciotti; Ernst C. Wit (Comput. Stat. Data Anal., 2024)

Stochastic actor oriented model with random effects. - Giacomo Ceoldo; Tom A. B. Snijders; Ernst C. Wit (Soc. Networks, 2024)

Modeling non-linear effects with neural networks in Relational Event Models. - Edoardo Filippi-Mazzola; Ernst C. Wit (Soc. Networks, 2024)

Causal drivers of dynamic networks. - Melania Lembo; Ester Riccardi; Veronica Vinciotti; Ernst C. Wit (CLeaR, 2025)