Evaluation of rate law approximations in bottom-up kinetic models of metabolism. - Bin Du; Daniel C. Zielinski; Erol S. Kavvas; Andreas Dräger; Justin Tan; Zhen Zhang; Kayla E. Ruggiero; Garri A. Arzumanyan; Bernhard O. Palsson (BMC Syst. Biol., 2016)

ssbio: a Python framework for structural systems biology. - Nathan Mih; Elizabeth Brunk; Ke Chen; Edward Catoiu; Anand Sastry 002; Erol S. Kavvas; Jonathan M. Monk; Zhen Zhang; Bernhard O. Palsson (Bioinform., 2018)

Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa. - Xin Fang; Jonathan M. Monk; Nathan Mih; Bin Du; Anand Sastry 002; Erol S. Kavvas; Yara Seif; Larry Smarr; Bernhard O. Palsson (BMC Syst. Biol., 2018)

Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions. - Erol S. Kavvas; Yara Seif; James T. Yurkovich; Charles J. Norsigian; Saugat Poudel; William W. Greenwald; Sankha Ghatak; Bernhard O. Palsson; Jonathan M. Monk (BMC Syst. Biol., 2018)

Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens. - Jason C. Hyun; Erol S. Kavvas; Jonathan M. Monk; Bernhard O. Palsson (PLoS Comput. Biol., 2020)

Independent component analysis recovers consistent regulatory signals from disparate datasets. - Anand V. Sastry; Alyssa Hu; David Heckmann; Saugat Poudel; Erol S. Kavvas; Bernhard O. Palsson (PLoS Comput. Biol., 2021)