Analysis of High-Throughput Flow Cytometry Data Using plateCore. - Errol Strain; Florian Hahne; Ryan Remy Brinkman; Perry Haaland (Adv. Bioinformatics, 2009)

flowCore: a Bioconductor package for high throughput flow cytometry. - Florian Hahne; Nolwenn LeMeur; Ryan Remy Brinkman; Byron Ellis; Perry Haaland; Deepayan Sarkar; Josef Spidlen; Errol Strain; Robert Gentleman (BMC Bioinform., 2009)

CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data. - Steve Davis 002; James B. Pettengill; Yan Luo; Justin Payne; Al Shpuntoff; Hugh Rand; Errol Strain (PeerJ Comput. Sci., 2015)

TreeToReads - a pipeline for simulating raw reads from phylogenies. - Emily Jane McTavish; James B. Pettengill; Steve Davis 002; Hugh Rand; Errol Strain; Marc Allard; Ruth E. Timme (BMC Bioinform., 2017)

PRAWNS: compact pan-genomic features for whole-genome population genomics. - Kiran Javkar; Hugh Rand; Errol Strain; Mihai Pop (Bioinform., 2023)