Efficient estimation of emission probabilities in profile hidden Markov models. - Virpi Ahola; Tero Aittokallio; Esa Uusipaikka; Mauno Vihinen (Bioinform., 2003)

A statistical score for assessing the quality of multiple sequence alignments. - Virpi Ahola; Tero Aittokallio; Mauno Vihinen; Esa Uusipaikka (BMC Bioinform., 2006)

Model-based prediction of sequence alignment quality. - Virpi Ahola; Tero Aittokallio; Mauno Vihinen; Esa Uusipaikka (Bioinform., 2008)

Optimising an observational water monitoring network for Archipelago Sea, South West Finland. - Mika Murtojärvi; Tapio Suominen; Esa Uusipaikka; Olli Nevalainen (Comput. Geosci., 2011)