Hierarchical clustering based on the information bottleneck method using a control process. - Ester Bonmati; Anton Bardera; Imma Boada; Miquel Feixas; Mateu Sbert (Pattern Anal. Appl., 2015)

Assessment of Electromagnetic Tracking Accuracy for Endoscopic Ultrasound. - Ester Bonmati; Yipeng Hu; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (CARE@MICCAI, 2016)

2D-3D Registration Accuracy Estimation for Optimised Planning of Image-Guided Pancreatobiliary Interventions. - Yipeng Hu; Ester Bonmati; Eli Gibson; John H. Hipwell; David J. Hawkes; Steven Bandula; Stephen P. Pereira; Dean C. Barratt (MICCAI (1), 2016)

Study of brain complexity using information theory tools. - Ester Bonmati (2016)

Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks. - Eli Gibson; Francesco Giganti; Yipeng Hu; Ester Bonmati; Steve Bandula; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (MICCAI (1), 2017)

Brain parcellation based on information theory. - Ester Bonmati; Anton Bardera; Imma Boada (Comput. Methods Programs Biomed., 2017)

Label-driven weakly-supervised learning for multimodal deformable image registration. - Yipeng Hu; Marc Modat; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; J. Alison Noble; Dean C. Barratt; Tom Vercauteren (CoRR, 2017)

Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. - Ester Bonmati; Yipeng Hu; Nikhil Sindhwani; Hans Peter Dietz; Jan D'hooge; Dean C. Barratt; Jan Deprest; Tom Vercauteren (CoRR, 2017)

Label-driven weakly-supervised learning for multimodal deformarle image registration. - Yipeng Hu; Marc Modat; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; J. Alison Noble; Dean C. Barratt; Tom Vercauteren (ISBI, 2018)

Adversarial Deformation Regularization for Training Image Registration Neural Networks. - Yipeng Hu; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; Tom Vercauteren; J. Alison Noble; Dean C. Barratt (MICCAI (1), 2018)

Technical note: automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. - Ester Bonmati; Yipeng Hu; Nikhil Sindhwani; Hans Peter Dietz; Jan D'hooge; Dean C. Barratt; Jan Deprest; Tom Vercauteren (Image-Guided Procedures, 2018)

Automatic slice segmentation of intraoperative transrectal ultrasound images using convolutional neural networks. - Nooshin Ghavami; Yipeng Hu; Ester Bonmati; Rachael Rodell; Eli Gibson; Caroline M. Moore; Dean C. Barratt (Image-Guided Procedures, 2018)

Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures. - Ester Bonmati; Yipeng Hu; Eli Gibson; Laura Uribarri; Geri Keane; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (Int. J. Comput. Assist. Radiol. Surg., 2018)

Novel Brain Complexity Measures Based on Information Theory. - Ester Bonmati; Anton Bardera; Miquel Feixas; Imma Boada (Entropy, 2018)

Weakly-supervised convolutional neural networks for multimodal image registration. - Yipeng Hu; Marc Modat; Eli Gibson; Wenqi Li 001; Nooshin Ghavami; Ester Bonmati; Guotai Wang; Steven Bandula; Caroline M. Moore; Mark Emberton; Sébastien Ourselin; J. Alison Noble; et al. (Medical Image Anal., 2018)

Automatic Multi-Organ Segmentation on Abdominal CT With Dense V-Networks. - Eli Gibson; Francesco Giganti; Yipeng Hu; Ester Bonmati; Steve Bandula; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (IEEE Trans. Medical Imaging, 2018)

Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration. - Nooshin Ghavami; Yipeng Hu; Eli Gibson; Ester Bonmati; Mark Emberton; Caroline M. Moore; Dean C. Barratt (Medical Image Anal., 2019)

Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification. - Alex Grimwood; Helen McNair; Yipeng Hu; Ester Bonmati; Dean C. Barratt; Emma J. Harris (MICCAI (3), 2020)

SciKit-Surgery: compact libraries for surgical navigation. - Stephen A. Thompson; Thomas Dowrick; Mian Ahmad; Goufang Xiao; Bongjin Koo; Ester Bonmati; Kim Kahl; Matthew J. Clarkson (Int. J. Comput. Assist. Radiol. Surg., 2020)

Introduction to Medical Image Registration with DeepReg, Between Old and New. - Nina Montaña Brown; Yunguan Fu; Shaheer U. Saeed; Adrià Casamitjana; Zachary M. C. Baum; Rémi Delaunay; Qianye Yang; Alex Grimwood; Zhe Min; Ester Bonmati; Tom Vercauteren; Matthew J. Clarkson; et al. (CoRR, 2020)

DeepReg: a deep learning toolkit for medical image registration. - Yunguan Fu; Nina Montaña Brown; Shaheer U. Saeed; Adrià Casamitjana; Zachary Baum; Rémi Delaunay; Qianye Yang; Alexander Grimwood; Zhe Min; Stefano B. Blumberg; Juan Eugenio Iglesias; Dean C. Barratt; et al. (J. Open Source Softw., 2020)

DeepReg: a deep learning toolkit for medical image registration. - Yunguan Fu; Nina Montaña Brown; Shaheer U. Saeed; Adrià Casamitjana; Zachary M. C. Baum; Rémi Delaunay; Qianye Yang; Alexander Grimwood; Zhe Min; Stefano B. Blumberg; Juan Eugenio Iglesias; Dean C. Barratt; et al. (Zenodo, 2020)

Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network. - Alexander Grimwood; João Ramalhinho; Zachary M. C. Baum; Nina Montaña Brown; Gavin J. Johnson; Yipeng Hu; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt; Ester Bonmati (ASMUS@MICCAI, 2021)

Image quality assessment for closed-loop computer-assisted lung ultrasound. - Zachary M. C. Baum; Ester Bonmati; Lorenzo Cristoni; Andrew Walden; Ferran Prados; Baris Kanber; Dean C. Barratt; David J. Hawkes; Geoff J. M. Parker; Claudia A. M. Gandini Wheeler-Kingshott; Yipeng Hu (Image-Guided Procedures, 2021)

Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks. - Ester Bonmati; Yipeng Hu; Alexander Grimwood; Gavin J. Johnson; George Goodchild; Margaret G. Keane; Kurinchi Gurusamy; Brian R. Davidson; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt (CoRR, 2021)

Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT. - João Ramalhinho; Bongjin Koo; Nina Montaña Brown; Shaheer U. Saeed; Ester Bonmati; Kurinchi Gurusamy; Stephen P. Pereira; Brian R. Davidson; Yipeng Hu; Matthew J. Clarkson (Int. J. Comput. Assist. Radiol. Surg., 2022)

Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks. - Ester Bonmati; Yipeng Hu; Alexander Grimwood; Gavin J. Johnson; George Goodchild; Margaret G. Keane; Kurinchi Gurusamy; Brian R. Davidson; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt (IEEE Trans. Medical Imaging, 2022)

3D CATBraTS: Channel Attention Transformer for Brain Tumour Semantic Segmentation. - Rim El Badaoui; Ester Bonmati Coll; Aleka Psarrou; Barbara Villarini (CBMS, 2023)

Competing for pixels: a self-play algorithm for weakly-supervised segmentation. - Shaheer U. Saeed; Shiqi Huang; João Ramalhinho; Iani J. M. B. Gayo; Nina Montaña Brown; Ester Bonmati; Stephen P. Pereira; Brian R. Davidson; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (CoRR, 2024)

AI-assisted prostate cancer detection and localisation on biparametric MR by classifying radiologist-positives. - Xiangcen Wu; Yipei Wang; Qianye Yang; Natasha Thorley; Shonit Punwani; Veeru Kasivisvanathan; Ester Bonmati; Yipeng Hu (CoRR, 2024)

Active learning using adaptable task-based prioritisation. - Shaheer U. Saeed; João Ramalhinho; Mark A. Pinnock; Ziyi Shen; Yunguan Fu; Nina Montaña Brown; Ester Bonmati; Dean C. Barratt; Stephen P. Pereira; Brian R. Davidson; Matthew J. Clarkson; Yipeng Hu (Medical Image Anal., 2024)

The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy. - Iani J. M. B. Gayo; Shaheer U. Saeed; Ester Bonmati; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (Int. J. Comput. Assist. Radiol. Surg., 2024)

AI-based System for Brain Tumor Segmentation and 3D Visualization. - Rim El Badaoui; Anandaeaswaran Brainthra; Ester Bonmati Coll; Alexandra Psarrou; Barbara Villarini (ISCAS, 2025)

Competing for Pixels: A Self-Play Algorithm for Weakly-Supervised Semantic Segmentation. - Shaheer U. Saeed; Shiqi Huang; João Ramalhinho; Iani J. M. B. Gayo; Nina Montaña Brown; Ester Bonmati; Stephen P. Pereira; Brian R. Davidson; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (IEEE Trans. Pattern Anal. Mach. Intell., 2025)

Policy to Assist Iteratively Local Segmentation: Optimising Modality and Location Selection for Prostate Cancer Localisation. - Xiangcen Wu; Shaheer U. Saeed; Yipei Wang; Ester Bonmati Coll; Yipeng Hu (CoRR, 2025)