A mixture model for the evolution of gene expression in non-homogeneous datasets. - Gerald T. Quon; Yee Whye Teh; Esther T. Chan; Timothy R. Hughes; Michael Brudno; Quaid Morris (NIPS, 2008)

RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins. - Hilal Kazan; Debashish Ray; Esther T. Chan; Timothy R. Hughes; Quaid Morris (PLoS Comput. Biol., 2010)

Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report. - Esther T. Chan; J. Michael Cherry (Database J. Biol. Databases Curation, 2012)

Saccharomyces Genome Database: the genomics resource of budding yeast. - J. Michael Cherry; Eurie L. Hong; Craig Amundsen; Rama Balakrishnan; Gail Binkley; Esther T. Chan; Karen R. Christie; Maria C. Costanzo; Selina S. Dwight; Stacia R. Engel; Dianna G. Fisk; Jodi E. Hirschman; et al. (Nucleic Acids Res., 2012)

Saccharomyces genome database provides new regulation data. - Maria C. Costanzo; Stacia R. Engel; Edith D. Wong; Paul Lloyd; Kalpana Karra; Esther T. Chan; Shuai Weng; Kelley M. Paskov; Greg R. Roe; Gail Binkley; Benjamin C. Hitz; J. Michael Cherry (Nucleic Acids Res., 2014)

Ontology application and use at the ENCODE DCC. - Venkat S. Malladi; Drew T. Erickson; Nikhil R. Podduturi; Laurence D. Rowe; Esther T. Chan; Jean M. Davidson; Benjamin C. Hitz; Marcus Ho; Brian T. Lee; Stuart R. Miyasato; Greg R. Roe; Matt Simison; et al. (Database J. Biol. Databases Curation, 2015)

Principles of metadata organization at the ENCODE data coordination center. - Eurie L. Hong; Cricket A. Sloan; Esther T. Chan; Jean M. Davidson; Venkat S. Malladi; J. Seth Strattan; Benjamin C. Hitz; Idan Gabdank; Aditi K. Narayanan; Marcus Ho; Brian T. Lee; Laurence D. Rowe; et al. (Database J. Biol. Databases Curation, 2016)

ENCODE data at the ENCODE portal. - Cricket A. Sloan; Esther T. Chan; Jean M. Davidson; Venkat S. Malladi; J. Seth Strattan; Benjamin C. Hitz; Idan Gabdank; Aditi K. Narayanan; Marcus Ho; Brian T. Lee; Laurence D. Rowe; Timothy R. Dreszer; et al. (Nucleic Acids Res., 2016)

Prevention of data duplication for high throughput sequencing repositories. - Idan Gabdank; Esther T. Chan; Jean M. Davidson; Jason A. Hilton; Carrie A. Davis; Ulugbek K. Baymuradov; Aditi K. Narayanan; Kathrina C. Onate; Keenan Graham; Stuart R. Miyasato; Timothy R. Dreszer; J. Seth Strattan; et al. (Database J. Biol. Databases Curation, 2018)

The Encyclopedia of DNA elements (ENCODE): data portal update. - Carrie A. Davis; Benjamin C. Hitz; Cricket A. Sloan; Esther T. Chan; Jean M. Davidson; Idan Gabdank; Jason A. Hilton; Kriti Jain; Ulugbek K. Baymuradov; Aditi K. Narayanan; Kathrina C. Onate; Keenan Graham; et al. (Nucleic Acids Res., 2018)