FRAGS: estimation of coding sequence substitution rates from fragmentary data. - Estienne C. Swart; Winston A. Hide; Cathal Seoighe (BMC Bioinform., 2004)

BleTIES: annotation of natural genome editing in ciliates using long read sequencing. - Brandon K. B. Seah; Estienne C. Swart (Bioinform., 2021)