XML for bioinformatics. - Ethan G. Cerami (Springer, 2005)

cPath: open source software for collecting, storing, and querying biological pathways. - Ethan G. Cerami; Gary D. Bader; Benjamin E. Gross; Chris Sander (BMC Bioinform., 2006)

Agile methods in biomedical software development: a multi-site experience report. - David W. Kane; Moses M. Hohman; Ethan G. Cerami; Michael W. McCormick; Karl F. Kuhlmman; Jeff A. Byrd (BMC Bioinform., 2006)

Pathway Commons, a web resource for biological pathway data. - Ethan G. Cerami; Benjamin E. Gross; Emek Demir; Igor V. Rodchenkov; Özgün Babur; Nadia Anwar; Nikolaus Schultz; Gary D. Bader; Chris Sander (Nucleic Acids Res., 2011)

PiHelper: an open source framework for drug-target and antibody-target data. - Bülent Arman Aksoy; Jianjiong Gao; Gideon Dresdner; Weiqing Wang; Alex Root; Xiaohong Jing; Ethan G. Cerami; Chris Sander (Bioinform., 2013)