Improvements to a Class of Distance Matrix Methods for Inferring Species Trees from Gene Trees. - Laura J. Helmkamp; Ethan M. Jewett; Noah A. Rosenberg (J. Comput. Biol., 2012)

iGLASS: An Improvement to the GLASS Method for Estimating Species Trees from Gene Trees. - Ethan M. Jewett; Noah A. Rosenberg (J. Comput. Biol., 2012)

SpectralTDF: transition densities of diffusion processes with time-varying selection parameters, mutation rates and effective population sizes. - Matthias Steinrücken; Ethan M. Jewett; Yun S. Song (Bioinform., 2016)