Self-activating P Systems. - Eugen Czeizler (WMC-CdeA, 2002)

On the size of the inverse neighborhoods for one-dimensional reversible cellular automata. - Eugen Czeizler (Theor. Comput. Sci., 2004)

A Tight Linear Bound on the Neighborhood of Inverse Cellular Automata. - Eugen Czeizler; Jarkko Kari (ICALP, 2005)

Parallel Communicating Watson-Crick Automata Systems. - Elena Czeizler; Eugen Czeizler (Acta Cybern., 2006)

A Short Survey on Watson-Crick Automata. - Elena Czeizler; Eugen Czeizler (Bull. EATCS, 2006)

On the power of parallel communicating Watson-Crick automata systems. - Elena Czeizler; Eugen Czeizler (Theor. Comput. Sci., 2006)

A tight linear bound on the synchronization delay of bijective automata. - Eugen Czeizler; Jarkko Kari (Theor. Comput. Sci., 2007)

Watson-Crick automata: determinism and state complexity. - Elena Czeizler; Eugen Czeizler; Lila Kari; Kai Salomaa (DCFS, 2008)

Unambiguous Automata. - Marie-Pierre Béal; Eugen Czeizler; Jarkko Kari; Dominique Perrin (Math. Comput. Sci., 2008)

Control Strategies for the Regulation of the Eukaryotic Heat Shock Response. - Elena Czeizler; Eugen Czeizler; Ralph-Johan Back; Ion Petre (CMSB, 2009)

Geometrical tile design for complex neighborhoods. - Eugen Czeizler; Lila Kari (Frontiers Comput. Neurosci., 2009)

On the descriptional complexity of Watson-Crick automata. - Elena Czeizler; Eugen Czeizler; Lila Kari; Kai Salomaa (Theor. Comput. Sci., 2009)

Synthesizing Small and Reliable Tile Sets for Patterned DNA Self-assembly. - Tuomo Lempiäinen; Eugen Czeizler; Pekka Orponen (DNA, 2011)

Quantitative Model Refinement as a Solution to the Combinatorial Size Explosion of Biomodels. - Elena Czeizler; Eugen Czeizler; Bogdan Iancu; Ion Petre (SASB, 2011)

An extension of the Lyndon-Schützenberger result to pseudoperiodic words. - Elena Czeizler; Eugen Czeizler; Lila Kari; Shinnosuke Seki 001 (Inf. Comput., 2011)

Towards a neighborhood simplification of tile systems: From Moore to quasi-linear dependencies. - Eugen Czeizler; Lila Kari (Nat. Comput., 2011)

Quantitative Refinement of Reaction Models. - Bogdan Iancu; Elena Czeizler; Eugen Czeizler; Ion Petre (Int. J. Unconv. Comput., 2012)

Quantitative Analysis of the Self-Assembly Strategies of Intermediate Filaments from Tetrameric Vimentin. - Eugen Czeizler; Andrzej Mizera; Elena Czeizler; Ralph-Johan Back; John E. Eriksson; Ion Petre (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

The Phosphorylation of the Heat Shock Factor as a Modulator for the Heat Shock Response. - Eugen Czeizler; Vladimir Rogojin; Ion Petre (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Self-assembly Models of Variable Resolution. - Andrzej Mizera; Eugen Czeizler; Ion Petre (Trans. Comp. Sys. Biology, 2012)

Yield Optimization Strategies for (DNA) Staged Tile Assembly Systems. - Eugen Czeizler; Pekka Orponen (TPNC, 2013)

Synthesizing minimal tile sets for complex patterns in the framework of patterned DNA self-assembly. - Eugen Czeizler; Alexandru Popa 001 (Theor. Comput. Sci., 2013)

Design of a Minimal System for Self-replication of Rectangular Patterns of DNA Tiles. - Vinay Kumar Gautam; Eugen Czeizler; Pauline C. Haddow; Martin Kuiper (TPNC, 2014)

Search methods for tile sets in patterned DNA self-assembly. - Mika Göös; Tuomo Lempiäinen; Eugen Czeizler; Pekka Orponen (J. Comput. Syst. Sci., 2014)

An Excursion Through Quantitative Model Refinement. - Sepinoud Azimi; Eugen Czeizler; Cristian Gratie; Diana-Elena Gratie; Bogdan Iancu; Nebiat Ibssa; Ion Petre; Vladimir Rogojin; Tolou Shadbahr; Fatemeh Shokri (Int. Conf. on Membrane Computing, 2015)

DNA rendering of polyhedral meshes at the nanoscale. - Erik Benson; Abdulmelik Mohammed; Johan Gardell; Sergej Masich; Eugen Czeizler; Pekka Orponen; Björn Högberg (Nat., 2015)

Target Controllability of Linear Networks. - Eugen Czeizler; Cristian Gratie; Wu Kai Chiu; Krishna Kanhaiya; Ion Petre (CMSB, 2016)

Computational modelling of the kinetic Tile Assembly Model using a rule-based approach. - Abdulmelik Mohammed; Elena Czeizler; Eugen Czeizler (Theor. Comput. Sci., 2017)

DNA-Guided Assembly of Nanocellulose Meshes. - Alexandru Amarioarei; Gefry Barad; Eugen Czeizler; Ana-Maria Dobre; Corina Itcus; Victor Mitrana; Andrei Paun; Mihaela Paun; Frankie Spencer; Romica Trandafir; Iris Tusa (TPNC, 2018)

NetControl4BioMed: a pipeline for biomedical data acquisition and analysis of network controllability. - Krishna Kanhaiya; Vladimir Rogojin; Keivan Kazemi; Eugen Czeizler; Ion Petre (BMC Bioinform., 2018)

One Dimensional DNA Tiles Self Assembly Model Simulation. - Alexandru Amarioarei; Gefry Barad; Elena Czeizler; Eugen Czeizler; Ana-Maria Dobre; Corina Itcus; Andrei Paun; Mihaela Paun; Romica Trandafir; Iris Tusa (Int. J. Unconv. Comput., 2018)

Structural Target Controllability of Linear Networks. - Eugen Czeizler; Wu Kai Chiu; Cristian Gratie; Krishna Kanhaiya; Ion Petre (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Simulation of one dimensional staged DNA tile assembly by the signal-passing hierarchical TAM. - Gefry Barad; Alexandru Amarioarei; Mihaela Paun; Ana-Maria Dobre; Corina Itcus; Iris Tusa; Romica Trandafir; Eugen Czeizler (KES, 2019)

Identifying efficient controls of complex interaction networks using genetic algorithms. - Victor-Bogdan Popescu; Krishna Kanhaiya; Iulian Nastac; Eugen Czeizler; Ion Petre (CoRR, 2020)

VDNA-Lab: A Computational Simulation Platform for DNA Multi-strand Dynamics. - Frankie Spencer; Usman Sanwal; Eugen Czeizler (SIMULTECH, 2021)

NetControl4BioMed: a web-based platform for controllability analysis of protein-protein interaction networks. - Victor-Bogdan Popescu; José Ángel Sánchez Martín; Daniela Schacherer; Sadra Safadoust; Negin Majidi; Andrei Andronescu; Alexandru Nedea; Diana Ion; Eduard Mititelu; Eugen Czeizler; Ion Petre (Bioinform., 2021)

Network modeling methods for precision medicine. - Elio Nushi; Victor-Bogdan Popescu; José Ángel Sánchez Martín; Sergiu Ivanov 001; Eugen Czeizler; Ion Petre (CoRR, 2021)

Distributed Simulations of DNA Multi-strand Dynamics. - Frankie Spencer; Usman Sanwal; Eugen Czeizler (SIMULTECH, 2022)

Network analytics for drug repurposing in COVID-19. - Nicoleta Siminea; Victor-Bogdan Popescu; José Ángel Sánchez Martín; Daniela Florea; Georgiana Gavril; Ana Maria Gheorghe; Corina Itcus; Krishna Kanhaiya; Octavian Pacioglu; Laura Ioana Popa; Romica Trandafir; Maria Iris Tusa; et al. (Briefings Bioinform., 2022)

Fixed Parameter Algorithms and Hardness of Approximation Results for the Structural Target Controllability Problem. - Eugen Czeizler; Alexandru Popa 001; Victor Popescu (Sci. Ann. Comput. Sci., 2022)

Synergizing Data Imputation and Electronic Health Records for Advancing Prostate Cancer Research: Challenges, and Practical Applications. - Abderrahim Oussama Batouche; Eugen Czeizler; Miika Koskinen; Tuomas Mirtti; Antti Sakari Rannikko (BIOSTEC (2), 2024)