Analysis of High-throughput DNA Methylation Bead Arrays Utilizing Bayesian Genotyping Algorithms. - Yuanyuan Xiao; Mark R. Segal; Eugene Andres Houseman; Joseph Wiemels; John K. Wiencke; Shichun Zheng; Margaret R. Wrensch; Brock C. Christensen; Carmen J. Marsit; Karl T. Kelsey; Heather H. Nelson; Margaret R. Karagas; et al. (BMEI (1), 2008)

Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions. - Eugene Andres Houseman; Brock C. Christensen; Ru-Fang Yeh; Carmen J. Marsit; Margaret R. Karagas; Margaret R. Wrensch; Heather H. Nelson; Joseph Wiemels; Shichun Zheng; John K. Wiencke; Karl T. Kelsey (BMC Bioinform., 2008)

Copy number variation has little impact on bead-array-based measures of DNA methylation. - Eugene Andres Houseman; Brock C. Christensen; Margaret R. Karagas; Margaret R. Wrensch; Heather H. Nelson; Joseph Wiemels; Shichun Zheng; John K. Wiencke; Karl T. Kelsey; Carmen J. Marsit (Bioinform., 2009)

Semi-supervised recursively partitioned mixture models for identifying cancer subtypes. - Devin C. Koestler; Carmen J. Marsit; Brock C. Christensen; Margaret R. Karagas; Raphael Bueno; David J. Sugarbaker; Karl T. Kelsey; Eugene Andres Houseman (Bioinform., 2010)

DNA methylation arrays as surrogate measures of cell mixture distribution. - Eugene Andres Houseman; William P. Accomando; Devin C. Koestler; Brock C. Christensen; Carmen J. Marsit; Heather H. Nelson; John K. Wiencke; Karl T. Kelsey (BMC Bioinform., 2012)

Reference-free cell mixture adjustments in analysis of DNA methylation data. - Eugene Andres Houseman; John Molitor; Carmen J. Marsit (Bioinform., 2014)

Cell-composition effects in the analysis of DNA methylation array data: a mathematical perspective. - Eugene Andres Houseman; Karl T. Kelsey; John K. Wiencke; Carmen J. Marsit (BMC Bioinform., 2015)

OxyBS: estimation of 5-methylcytosine and 5-hydroxymethylcytosine from tandem-treated oxidative bisulfite and bisulfite DNA. - Eugene Andres Houseman; Kevin C. Johnson; Brock C. Christensen (Bioinform., 2016)

methyLiftover: cross-platform DNA methylation data integration. - Alexander J. Titus; Eugene Andres Houseman; Kevin C. Johnson; Brock C. Christensen (Bioinform., 2016)

Reference-free deconvolution of DNA methylation data and mediation by cell composition effects. - Eugene Andres Houseman; Molly L. Kile; David C. Christiani; Tan A. Ince; Karl T. Kelsey; Carmen J. Marsit (BMC Bioinform., 2016)

Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software. - Clémentine Decamps; Florian Privé; Raphael Bacher; Daniel Jost 002; Arthur Waguet; Eugene Andres Houseman; Eugene Lurie; Pavlo Lutsik; Aleksandar Milosavljevic; Michael Scherer; Michael G. B. Blum; Magali Richard (BMC Bioinform., 2020)