Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis. - Brian Tjaden; David R. Haynor; Sergey Stolyar; Carsten Rosenow; Eugene Kolker (ISMB, 2002)

Integration of Data for Gene Annotation Using the BioMediator System. - Brenton Louie; Peter Mork; Ron Shaker; Natali Kolker; Eugene Kolker; Peter Tarczy-Hornoch (AMIA, 2005)

A predictive model for identifying proteins by a single peptide match. - Roger Higdon; Eugene Kolker (Bioinform., 2007)

A note on the false discovery rate and inconsistent comparisons between experiments. - Roger Higdon; Gerald van Belle; Eugene Kolker (Bioinform., 2008)

Modeling sequence and function similarity between proteins for protein functional annotation. - Roger Higdon; Brenton Louie; Eugene Kolker (HPDC, 2010)

The necessity of adjusting tests of protein category enrichment in discovery proteomics. - Brenton Louie; Roger Higdon; Eugene Kolker (Bioinform., 2010)

MOPED: Model Organism Protein Expression Database. - Eugene Kolker; Roger Higdon; Winston Haynes; Dean Welch; William Broomall; Doron Lancet; Larissa Stanberry; Natali Kolker (Nucleic Acids Res., 2012)

Introducing a Metadata Checklist for Omics Data. - Edd Dumbill; Eugene Kolker (Big Data, 2013)

Unraveling the Complexities of Life Sciences Data. - Roger Higdon; Winston Haynes; Larissa Stanberry; Elizabeth Stewart; Gregory Yandl; Chris Howard; William Broomall; Natali Kolker; Eugene Kolker (Big Data, 2013)

Predictive Analytics In Healthcare: Medications as a Predictor of Medical Complexity. - Roger Higdon; Elizabeth Stewart; Jared C. Roach; Caroline Dombrowski; Larissa Stanberry; Holly Clifton; Natali Kolker; Gerald van Belle; Mark A. Del Beccaro; Eugene Kolker (Big Data, 2013)

Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. - Eugene Kolker; Vural Özdemir; Lennart Martens; William Hancock; Gordon A. Anderson; Nathaniel Anderson; Sukru Aynacioglu; Ancha V. Baranova; Shawn R. Campagna; Rui Chen; John Choiniere; Stephen P. Dearth; et al. (Big Data, 2013)

Metadata Checklist for the Integrated Personal Omics Study: Proteomics and Metabolomics Experiments. - Michael Snyder 001; George Mias; Larissa Stanberry; Eugene Kolker (Big Data, 2013)

Delsa Workshop IV: Launching the Quantified Human Initiative. - Elizabeth Stewart; Todd Smith; Andrea De Souza; Jack Faris; Lennart Martens; Sophie Mohin; Vural Özdemir; Courtney MacNealy-Koch; Eugene Kolker (Big Data, 2013)

Differential Expression Analysis for Pathways. - Winston A. Haynes; Roger Higdon; Larissa Stanberry; Dwayne Collins; Eugene Kolker (PLoS Comput. Biol., 2013)

Healthcare Analytics: Creating a Prioritized Improvement System with Performance Benchmarking. - Eugene Kolker; Evelyne Kolker (Big Data, 2014)

Visualizing the Protein Sequence Universe. - Larissa Stanberry; Roger Higdon; Winston Haynes; Natali Kolker; William Broomall; Saliya Ekanayake; Adam Hughes; Yang Ruan; Judy Qiu; Eugene Kolker; Geoffrey C. Fox (Concurr. Comput. Pract. Exp., 2014)

Optimizing high performance computing workflow for protein functional annotation. - Larissa Stanberry; Bhanu Rekepalli; Yuan Liu; Paul Giblock; Roger Higdon; Elizabeth Montague; William Broomall; Natali Kolker; Eugene Kolker (Concurr. Comput. Pract. Exp., 2014)

Beyond protein expression, MOPED goes multi-omics. - Elizabeth Montague; Imre Janko; Larissa Stanberry; Elaine Lee; John Choiniere; Nathaniel Anderson; Elizabeth Stewart; William Broomall; Roger Higdon; Natali Kolker; Eugene Kolker (Nucleic Acids Res., 2015)

A Case Study: Analyzing City Vitality with Four Pillars of Activity - Live, Work, Shop, and Play. - Matt Griffin; Blake W. Nordstrom; Jon Scholes; Kate Joncas; Patrick Gordon; Elliott Krivenko; Winston Haynes; Roger Higdon; Elizabeth Stewart; Natali Kolker; Elizabeth Montague; Eugene Kolker (Big Data, 2016)

Genic insights from integrated human proteomics in GeneCards. - Simon Fishilevich; Shahar Zimmerman; Asher Kohn; Tsippi Iny Stein; Tsviya Olender; Eugene Kolker; Marilyn Safran; Doron Lancet (Database J. Biol. Databases Curation, 2016)

Data Science Community Matures with Diversity: Conference Observations, Highlights, and Interviews - Strata Data Conference, New York, September 11-13, 2018. - Eugene Kolker (Big Data, 2018)