SNPs3D: Candidate gene and SNP selection for association studies. - Peng Yue; Eugene Melamud; John Moult (BMC Bioinform., 2006)

EpiFire: An open source C++ library and application for contact network epidemiology. - Thomas Hladish; Eugene Melamud; Luis Barrera; Alison P. Galvani; Lauren Ancel Meyers (BMC Bioinform., 2012)