Particle Filtering for Nonlinear BOLD Signal Analysis. - Leigh A. Johnston; Eugene P. Duff; Gary F. Egan (MICCAI (2), 2006)

Complex spatio-temporal dynamics of fMRI BOLD: A study of motor learning. - Eugene P. Duff; Jinhu Xiong; Binquan Wang; Ross Cunnington; Peter T. Fox; Gary F. Egan (NeuroImage, 2007)

REX: Response Exploration for Neuroimaging Datasets. - Eugene P. Duff; Ross Cunnington; Gary F. Egan (Neuroinformatics, 2007)

Nonlinear estimation of the BOLD signal. - Leigh A. Johnston; Eugene P. Duff; Iven Mareels; Gary F. Egan (NeuroImage, 2008)

Long-term motor training induced changes in regional cerebral blood flow in both task and resting states. - Jinhu Xiong; Liangsuo Ma; Binquan Wang; Shalini Narayana; Eugene P. Duff; Gary F. Egan; Peter T. Fox (NeuroImage, 2009)

Task-driven ICA feature generation for accurate and interpretable prediction using fMRI. - Eugene P. Duff; Aaron J. Trachtenberg; Clare E. Mackay; Matthew Alexander Howard; Frederick Wilson; Stephen M. Smith 001; Mark William Woolrich (NeuroImage, 2012)

Utility of Partial Correlation for Characterising Brain Dynamics: MVPA-based Assessment of Regularisation and Network Selection. - Eugene P. Duff; Tamar R. Makin; Sasidhar Madugula; Stephen M. Smith 001; Mark William Woolrich (PRNI, 2013)

Resting-state fMRI in the Human Connectome Project. - Stephen M. Smith 001; Christian F. Beckmann; Jesper L. R. Andersson; Edward J. Auerbach; Janine D. Bijsterbosch; Gwenaëlle Douaud; Eugene P. Duff; David A. Feinberg; Ludovica Griffanti; Michael P. Harms; Michael Kelly; Timothy O. Laumann; et al. (NeuroImage, 2013)

MVPA to enhance the study of rare cognitive events: An investigation of experimental PTSD. - Katherine E. Niehaus; Ian A. Clark; Corin Bourne; Clare E. Mackay; Emily A. Holmes; Stephen M. Smith 001; Mark William Woolrich; Eugene P. Duff (PRNI, 2014)

Attentional load modulates large-scale functional brain connectivity beyond the core attention networks. - Dag Alnæs; Tobias Kaufmann 001; Geneviève Richard; Eugene P. Duff; Markus H. Sneve; Tor Endestad; Jan Egil Nordvik; Ole A. Andreassen; Stephen M. Smith 001; Lars T. Westlye (NeuroImage, 2015)

Network-level reorganisation of functional connectivity following arm amputation. - Tamar R. Makin; Nicola Filippini; Eugene P. Duff; David Henderson Slater; Irene Tracey; Heidi Johansen-Berg (NeuroImage, 2015)

The brain functional connectome is robustly altered by lack of sleep. - Tobias Kaufmann 001; Torbjørn Elvsåshagen; Dag Alnæs; Nathalia Zak; Per Ø. Pedersen; Linn B. Norbom; Sophia H. Quraishi; Enzo Tagliazucchi; Helmut Laufs; Atle Bjørnerud; Ulrik F. Malt; Ole A. Andreassen; et al. (NeuroImage, 2016)

Investigations into within- and between-subject resting-state amplitude variations. - Janine Bijsterbosch; Samuel J. Harrison; Eugene P. Duff; Fidel Alfaro-Almagro; Mark W. Woolrich; Stephen M. Smith 001 (NeuroImage, 2017)

Hand classification of fMRI ICA noise components. - Ludovica Griffanti; Gwenaëlle Douaud; Janine D. Bijsterbosch; Stefania Evangelisti; Fidel Alfaro-Almagro; Matthew F. Glasser; Eugene P. Duff; Sean P. Fitzgibbon; Robert Westphal; Davide Carone; Christian F. Beckmann; Stephen M. Smith 001 (NeuroImage, 2017)

Disambiguating brain functional connectivity. - Eugene P. Duff; Tamar R. Makin; Michiel Cottaar; Stephen M. Smith 001; Mark W. Woolrich (NeuroImage, 2018)

The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction. - Antonios Makropoulos; Emma C. Robinson; Andreas Schuh; Robert Wright; Sean P. Fitzgibbon; Jelena Bozek; Serena J. Counsell; Johannes K. Steinweg; Katy Vecchiato; Jonathan Passerat-Palmbach; Gregor Lenz; Filippo Mortari; et al. (NeuroImage, 2018)

Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants. - Luke Baxter; Sean P. Fitzgibbon; Fiona Moultrie; Sezgi Goksan; Mark Jenkinson; Stephen M. Smith 001; Jesper L. R. Andersson; Eugene P. Duff; Rebeccah Slater (NeuroImage, 2019)

Modelling subject variability in the spatial and temporal characteristics of functional modes. - Samuel J. Harrison; Janine D. Bijsterbosch; Andrew R. Segerdahl; Sean P. Fitzgibbon; Seyedeh-Rezvan Farahibozorg; Eugene P. Duff; Stephen M. Smith 001; Mark W. Woolrich (NeuroImage, 2020)

Integrating large-scale neuroimaging research datasets: Harmonisation of white matter hyperintensity measurements across Whitehall and UK Biobank datasets. - Valentina Bordin; Ilaria Bertani; Irene Mattioli; Vaanathi Sundaresan; Paul McCarthy; Sana Suri; Eniko Zsoldos; Nicola Filippini; Abda Mahmood; Luca Melazzini; Maria Marcella Laganà; Giovanna Zamboni; et al. (NeuroImage, 2021)

Amplitudes of resting-state functional networks - investigation into their correlates and biophysical properties. - Soojin Lee; Janine D. Bijsterbosch; Fidel Alfaro-Almagro; Lloyd T. Elliott; Paul McCarthy; Bernd Taschler; Roser Sala-Llonch; Christian F. Beckmann; Eugene P. Duff; Stephen M. Smith 001; Gwenaëlle Douaud (NeuroImage, 2023)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)