Discovery of small molecule inhibitors of ubiquitin-like poxvirus proteinase I7L using homology modeling and covalent docking approaches. - Vsevolod Katritch; Chelsea M. Byrd; Vladimir Tseitin; Dongcheng Dai; Eugene Raush; Maxim Totrov; Ruben Abagyan; Robert Jordan; Dennis E. Hruby (J. Comput. Aided Mol. Des., 2007)

SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts. - Manuel Rueda; Vsevolod Katritch; Eugene Raush; Ruben Abagyan (Bioinform., 2010)

FOCUS - Development of a Global Communication and Modeling Platform for Applied and Computational Medicinal Chemists. - Nikolaus Stiefl; Peter Gedeck; Donovan Chin; Peter Hunt; Mika K. Lindvall; Katrin Spiegel; Clayton Springer; Scott Biller; Christoph L. Buenemann; Takanori Kanazawa; Mitsunori Kato; Richard A. Lewis; et al. (J. Chem. Inf. Model., 2015)

Graph-Convolutional Neural Net Model of the Statistical Torsion Profiles for Small Organic Molecules. - Eugene Raush; Ruben Abagyan; Maxim Totrov (J. Chem. Inf. Model., 2022)