Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny. - Eugene Urrutia; Hao Chen 064; Zilu Zhou; Nancy Ruonan Zhang; Yuchao Jiang (Bioinform., 2018)

Destin: toolkit for single-cell analysis of chromatin accessibility. - Eugene Urrutia; Li Chen 029; Haibo Zhou; Yuchao Jiang (Bioinform., 2019)

SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references. - Meichen Dong; Aatish Thennavan; Eugene Urrutia; Yun Li; Charles M. Perou; Fei Zou; Yuchao Jiang (Briefings Bioinform., 2021)