Single-cell and coupled GRN models of cell patterning in the Arabidopsis thaliana root stem cell niche. - Eugenio Azpeitia; Mariana Benítez; Iliusi Vega; Carlos Villarreal; Elena R. Álvarez-Buylla (BMC Syst. Biol., 2010)

"Antelope": a hybrid-logic model checker for branching-time Boolean GRN analysis. - Gustavo Arellano; Julián Argil; Eugenio Azpeitia; Mariana Benítez; Miguel Carrillo; Pedro Arturo Góngora; David A. Rosenblueth; Elena R. Álvarez-Buylla (BMC Bioinform., 2011)

Cell Patterns Emerge from Coupled Chemical and Physical Fields with Cell Proliferation Dynamics: The Arabidopsis thaliana Root as a Study System. - Rafael A. Barrio; José Roberto Romero-Arias; Marco A. Noguez; Eugenio Azpeitia; Elizabeth Ortiz-Gutiérrez; Valeria Hernández-Hernández; Yuriria Cortes-Poza; Elena R. Álvarez-Buylla (PLoS Comput. Biol., 2013)

Inference of Boolean Networks from Gene Interaction Graphs Using a SAT Solver. - David A. Rosenblueth; Stalin Muñoz; Miguel Carrillo; Eugenio Azpeitia (AlCoB, 2014)

A Dynamic Gene Regulatory Network Model That Recovers the Cyclic Behavior of Arabidopsis thaliana Cell Cycle. - Elizabeth Ortiz-Gutiérrez; Karla García-Cruz; Eugenio Azpeitia; Aaron Castillo; María de la Paz Sánchez; Elena R. Álvarez-Buylla (PLoS Comput. Biol., 2015)

A dynamic genetic-hormonal regulatory network model explains multiple cellular behaviors of the root apical meristem of Arabidopsis thaliana. - Mónica L. García-Gómez; Eugenio Azpeitia; Elena R. Álvarez-Buylla (PLoS Comput. Biol., 2017)

Signaling pathways have an inherent need for noise to acquire information. - Eugenio Azpeitia; Eugenio P. Balanzario; Andreas Wagner (BMC Bioinform., 2020)

Bridging abstract dialectical argumentation and Boolean gene regulation. - Eugenio Azpeitia; Stan Muñoz Gutiérrez; David A. Rosenblueth; Octavio Zapata (CoRR, 2024)