Fault detection in a class of stochastic hybrid systems. - Eugenio Cinquemani; Mario Micheli; Giorgio Picci (CDC, 2004)

Identification of wood rings from sparse tomographic data. - Eugenio Cinquemani; Giorgio Picci (CDC, 2006)

A superposition principle for the Kalman filter. - Eugenio Cinquemani (Syst. Control. Lett., 2006)

State estimation in stochastic hybrid Systems with sparse observations. - Eugenio Cinquemani; Mario Micheli (IEEE Trans. Autom. Control., 2006)

Parameter identification for stochastic hybrid models of biological interaction networks. - Eugenio Cinquemani; Riccardo Porreca; Giancarlo Ferrari-Trecate; John Lygeros (CDC, 2007)

A general framework for the identification of jump Markov linear systems. - Eugenio Cinquemani; Riccardo Porreca; Giancarlo Ferrari-Trecate; John Lygeros (CDC, 2007)

Numerical analysis of FRAP experiments for DNA replication and repair. - Eugenio Cinquemani; Vassilis Roukos; Zoi Lygerou; John Lygeros (CDC, 2008)

Wavelet estimation by Bayesian thresholding and model selection. - Eugenio Cinquemani; Gianluigi Pillonetto (Autom., 2008)

Stochastic dynamics of genetic networks: modelling and parameter identification. - Eugenio Cinquemani; Andreas Milias-Argeitis; Sean Summers; John Lygeros (Bioinform., 2008)

Subtilin Production by Bacillus Subtilis: Stochastic Hybrid Models and Parameter Identification. - Eugenio Cinquemani; Riccardo Porreca; Giancarlo Ferrari-Trecate; John Lygeros (IEEE Trans. Autom. Control., 2008)

Probabilistic regulation in stochastic hybrid systems subject to safety constraints. - Debasish Chatterjee; Eugenio Cinquemani; John Lygeros (ADHS, 2009)

On stochastic control up to a hitting time. - Debasish Chatterjee; Eugenio Cinquemani; Georgios Chaloulos; John Lygeros (CDC, 2009)

Canalizing structure of genetic network dynamics: modelling and identification via mixed-integer programming. - Eugenio Cinquemani; Riccardo Porreca; John Lygeros; Giancarlo Ferrari-Trecate (CDC, 2009)

On convexity of stochastic optimization problems with constraints. - Mayank Agarwal; Eugenio Cinquemani; Debasish Chatterjee; John Lygeros (ECC, 2009)

Local Identification of Piecewise Deterministic Models of Genetic Networks. - Eugenio Cinquemani; Andreas Milias-Argeitis; Sean Summers; John Lygeros (HSCC, 2009)

Stochastic receding horizon control with output feedback and bounded control inputs. - Peter Hokayem 001; Eugenio Cinquemani; Debasish Chatterjee; Federico Ramponi; John Lygeros (CDC, 2010)

Structural identification of unate-like genetic network models from time-lapse protein concentration measurements. - Riccardo Porreca; Eugenio Cinquemani; John Lygeros; Giancarlo Ferrari-Trecate (CDC, 2010)

Identification of genetic network dynamics with unate structure. - Riccardo Porreca; Eugenio Cinquemani; John Lygeros; Giancarlo Ferrari-Trecate (Bioinform., 2010)

Convexity and convex approximations of discrete-time stochastic control problems with constraints. - Eugenio Cinquemani; Mayank Agarwal; Debasish Chatterjee; John Lygeros (Autom., 2011)

Identification of metabolic network models from incomplete high-throughput datasets. - Sara Berthoumieux; Matteo Brilli; Hidde de Jong; Daniel Kahn; Eugenio Cinquemani (Bioinform., 2011)

Stochastic receding horizon control with output feedback and bounded controls. - Peter Hokayem 001; Eugenio Cinquemani; Debasish Chatterjee; Federico Ramponi; John Lygeros (Autom., 2012)

State estimation for gene networks with intrinsic and extrinsic noise: A case study on E.coli arabinose uptake dynamics. - Alfonso Carta; Eugenio Cinquemani (ECC, 2013)

Identification of biological models from single-cell data: A comparison between mixed-effects and moment-based inference. - Andres M. Gonzalez; Jannis Uhlendorf; Joe Schaul; Eugenio Cinquemani; Grégory Batt; Giancarlo Ferrari-Trecate (ECC, 2013)

Towards Real-Time Control of Gene Expression at the Single Cell Level: A Stochastic Control Approach. - Lakshmeesh R. M. Maruthi; Ilya Tkachev; Alfonso Carta; Eugenio Cinquemani; Pascal Hersen; Grégory Batt; Alessandro Abate (CMSB, 2014)

Reconstruction of promoter activity statistics from reporter protein population snapshot data. - Eugenio Cinquemani (CDC, 2015)

Reconstructing Statistics of Promoter Switching from Reporter Protein Population Snapshot Data. - Eugenio Cinquemani (HSB, 2015)

Inference of protein kinetics by stochastic modeling and simulation of fluorescence recovery after photobleaching experiments. - Maria Anna Rapsomaniki; Eugenio Cinquemani; Nickolaos-Nikiforos Giakoumakis; Panagiotis Kotsantis; John Lygeros; Zoi Lygerou (Bioinform., 2015)

Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data. - Diana Stefan; Corinne Pinel; Stéphane Pinhal; Eugenio Cinquemani; Johannes Geiselmann; Hidde de Jong (PLoS Comput. Biol., 2015)

On Observability and Reconstruction of Promoter Activity Statistics from Reporter Protein Mean and Variance Profiles. - Eugenio Cinquemani (HSB, 2016)

What Population Reveals about Individual Cell Identity: Single-Cell Parameter Estimation of Models of Gene Expression in Yeast. - Artémis Llamosi; Andrés M. González-Vargas; Cristian Versari; Eugenio Cinquemani; Giancarlo Ferrari-Trecate; Pascal Hersen; Grégory Batt (PLoS Comput. Biol., 2016)

Estimation of time-varying growth, uptake and excretion rates from dynamic metabolomics data. - Eugenio Cinquemani; Valérie Laroute; Muriel Cocaign-Bousquet; Hidde de Jong; Delphine Ropers (Bioinform., 2017)

Identification, estimation and control of gene expression and metabolic network dynamics. (Identification, estimation et contrôle des dynamiques d'expression génique et des réseaux métaboliques). - Eugenio Cinquemani (2019)

Optimal control of bacterial growth for metabolite production: The role of timing and costs of control. - Eugenio Cinquemani; Francis Mairet; I. Yegorov; Hidde de Jong; Jean-Luc Gouzé (ECC, 2019)

Stochastic reaction networks with input processes: Analysis and application to gene expression inference. - Eugenio Cinquemani (Autom., 2019)

Inheritance and variability of kinetic gene expression parameters in microbial cells: modeling and inference from lineage tree data. - Aline Marguet; Marc Lavielle; Eugenio Cinquemani (Bioinform., 2019)

Enhanced production of heterologous proteins by a synthetic microbial community: Conditions and trade-offs. - Marco Mauri; Jean-Luc Gouzé; Hidde de Jong; Eugenio Cinquemani (PLoS Comput. Biol., 2020)

Optimization of microalgae biosynthesis via controlled algal-bacterial symbiosis. - Rand Asswad; Walid Djema; Olivier Bernard 003; Jean-Luc Gouzé; Eugenio Cinquemani (CDC, 2024)

Kalman-based approaches for online estimation of bioreactor dynamics from fluorescent reporter measurements. - Rand Asswad; Eugenio Cinquemani; Jean-Luc Gouzé (ECC, 2024)

Inference of Tree-Structured Auto-Regressive Models of Gene Expression Parameters from Generation-Snapshot Data. - Emrys Reginato; Aline Marguet; Eugenio Cinquemani (ECC, 2024)