DBSolve Optimum: a software package for kinetic modeling which allows dynamic visualization of simulation results. - Nail M. Gizzatkulov; Igor Goryanin; Eugeny A. Metelkin; Ekaterina A. Mogilevskaya; Kirill Peskov; Oleg V. Demin (BMC Syst. Biol., 2010)

Confidence intervals by constrained optimization - An algorithm and software package for practical identifiability analysis in systems biology. - Ivan I. Borisov; Eugeny A. Metelkin (PLoS Comput. Biol., 2020)

Heta compiler: a software tool for the development of large-scale QSP models and compilation into simulation formats. - Eugeny A. Metelkin (J. Open Source Softw., 2021)