Architecture and Design of GE1, a FCCM for Golomb Ruler Derivation. - Apostolos Dollas; Euripides Sotiriades; Apostolos Emmanouelides (FCCM, 1998)

General Purpose vs. Custom FCCM's: a Comparison of Splash2, Quickturn RPM, and GE1 for Golomb Ruler Derivation. - Apostolos Dollas; Euripides Sotiriades; Apostolos Emmanouelides; Lee House (FCCM, 1998)

Hardware-Software Codesign and Parallel Implementation of a Golomb Ruler Derivation Engine. - Euripides Sotiriades; Apostolos Dollas; Peter Athanas (FCCM, 2000)

Architecture and Application of PLATO, A Reconfigurable Active Network Platform. - Apostolos Dollas; Dionisios N. Pnevmatikatos; Nikolaos Aslanides; Stamatios Kavvadias; Euripides Sotiriades; Sotirios Zogopoulos; Kyprianos Papademetriou; Grigorios Chrysos 001; Konstantinos Harteros; Emanouil Antonidakis; Nikolaos Petrakis (FCCM, 2001)

Rapid Prototyping of a Reusable 4x4 Active ATM Switch Core with the PCI Pamette. - Apostolos Dollas; Nikolaos Aslanides; Stamatios Kavvadias; Euripides Sotiriades; Kyprianos Papademetriou; Dionisios N. Pnevmatikatos (IEEE International Workshop on Rapid System Prototyping, 2001)

A Case Study on Rapid Prototyping of Hardware Systems: The Effect of CAD Tool Capabilities, Design Flows, and Design Styles. - Apostolos Dollas; Kyprianos Papademetriou; Euripides Sotiriades; Dimitrios Theodoropoulos; Iosif Koidis; George Vernardos (IEEE International Workshop on Rapid System Prototyping, 2004)

FPGA based architecture for DNA sequence comparison and database search. - Euripides Sotiriades; Christos Kozanitis; Apostolos Dollas (IPDPS, 2006)

Some initial results on hardware BLAST acceleration with a reconfigurable architecture. - Euripides Sotiriades; Christos Kozanitis; Apostolos Dollas (IPDPS, 2006)

Rapid Phototyping of a System-on-a-Chip for the BLAST Algorithm Implementation. - Euripides Sotiriades; Christos Kozanitis; Grigorios Chrysos 001; Apostolos Dollas (IEEE International Workshop on Rapid System Prototyping, 2006)

Design Space Exploration for the BLAST Algorithm Implementation. - Euripides Sotiriades; Apostolos Dollas (FCCM, 2007)

A General Reconfigurable Architecture for the BLAST Algorithm. - Euripides Sotiriades; Apostolos Dollas (J. VLSI Signal Process., 2007)

A rate-based prefiltering approach to blast acceleration. - Panagiotis Afratis; Euripides Sotiriades; Grigorios Chrysos 001; Sotiria Fytraki; Dionisios N. Pnevmatikatos (FPL, 2008)

Design and implementation of a database filter for BLAST acceleration. - Panagiotis Afratis; Constantinos Galanakis; Euripides Sotiriades; Georgios-Grigorios Mplemenos; Grigorios Chrysos 001; Ioannis Papaefstathiou; Dionisios N. Pnevmatikatos (DATE, 2009)

A reconfigurable architecture for the Phylogenetic Likelihood Function. - Nikolaos Alachiotis 001; Alexandros Stamatakis; Euripides Sotiriades; Apostolos Dollas (FPL, 2009)

A FPGA based coprocessor for gene finding using Interpolated Markov Model (IMM). - Grigorios Chrysos 001; Euripides Sotiriades; Ioannis Papaefstathiou; Apostolos Dollas (FPL, 2009)

Exploring FPGAs for accelerating the phylogenetic likelihood function. - Nikolaos Alachiotis 001; Euripides Sotiriades; Apostolos Dollas; Alexandros Stamatakis (IPDPS, 2009)

Reconfigurable Systems for the Zuker and Predator Algorithms for Secondary Structure Prediction of Genetic Data. - Miltiadis Smerdis; Panagiotis Dagritzikos; Grigorios Chrysos 001; Euripides Sotiriades; Apostolos Dollas (FPL, 2010)

GE3: A single FPGA client-server architecture for Golomb Ruler derivation. - Pavlos Malakonakis; Euripides Sotiriades; Apostolos Dollas (FPT, 2010)

Reconfigurable Computing IP Cores for Multiple Sequence Alignment. - Matina Lakka; A. Desarti; Grigorios Chrysos 001; Euripides Sotiriades; Ioannis Papaefstathiou; Apostolos Dollas (BIOINFORMATICS, 2011)

Parallel accelerators for GlimmerHMM bioinformatics algorithm. - Nafsika Chrysanthou; Grigorios Chrysos 001; Euripides Sotiriades; Ioannis Papaefstathiou (DATE, 2011)

Reconfigurable architecture structures for the BLAST DNA sequencing algorithm - Euripides Sotiriades (2011)

Opportunities from the use of FPGAs as platforms for bioinformatics algorithms. - Grigorios Chrysos 001; Euripides Sotiriades; Christos Rousopoulos; Apostolos Dollas; Agathoklis Papadopoulos; Ioannis Kirmitzoglou; Vasilis J. Promponas; Theocharis Theocharides; George Petihakis 001; Jacques Lagnel; Panagiotis Vavylis; George Kotoulas (BIBE, 2012)

ROTA: An Archipelago-Wide Area Network for High Speed Communication to Ships. - Ioannis Papaefstathiou; Euripides Sotiriades; Stratos Apostolakis; Apostolos Dollas; Pantelis N. Karamolegkos; Marios Logaras; Ioannis Chatzigiannakis; Leonidas Vasilikiotis; Maria Emmanouilidou; Stavros Aggelidakis; Petros Hatzidakis (Panhellenic Conference on Informatics, 2012)

Reconfiguring the Bioinformatics Computational Spectrum: Challenges and Opportunities of FPGA-Based Bioinformatics Acceleration Platforms. - Grigorios Chrysos 001; Euripides Sotiriades; Christos Rousopoulos; K. Pramataris; Ioannis Papaefstathiou; Apostolos Dollas; Agathoklis Papadopoulos; Ioannis Kirmitzoglou; Vasilis J. Promponas; Theo Theocharides; George Petihakis 001; Jacques Lagnel (IEEE Des. Test, 2014)

Leveraging Reconfigurable Computing in Distributed Real-time Computation Systems. - Apostolos Nydriotis; Pavlos Malakonakis; Nikos Pavlakis; Grigorios Chrysos 001; Ekaterini Ioannou; Euripides Sotiriades; Minos N. Garofalakis; Apostolos Dollas (EDBT/ICDT Workshops, 2016)

An Architecture for the Acceleration of a Hybrid Leaky Integrate and Fire SNN on the Convey HC-2ex FPGA-Based Processor. - Emmanouil Kousanakis; Apostolos Dollas; Euripides Sotiriades; Ioannis Papaefstathiou; Dionisios N. Pnevmatikatos; Athanasia Papoutsi; Panagiotis C. Petrantonakis; Panayiota Poirazi; Spyridon Chavlis; George Kastellakis (FCCM, 2017)

Deploying FPGAs to future-proof genome-wide analyses based on linkage disequilibrium. - Dimitrios Bozikas; Nikolaos Alachiotis 001; Pavlos Pavlidis; Euripides Sotiriades; Apostolos Dollas (FPL, 2017)

Exploring Modern FPGA Platforms for Faster Phylogeny Reconstruction with RAxML. - Pavlos Malakonakis; Andreas Brokalakis; Nikolaos Alachiotis 001; Euripides Sotiriades; Apostolos Dollas (BIBE, 2020)

An FPGA-Based System for Video Processing to Detect Holes in Aquaculture Nets. - Theofilos Zacheilas; Konstantia Moirogiorgou; Nikos Papandroulakis; Euripides Sotiriades; Michalis E. Zervakis; Apostolos Dollas (BIBE, 2021)