Optimal control of distributed processes using reduced order models. - Eva Balsa-Canto; Antonio A. Alonso; Julio R. Banga (ECC, 2001)

Hybrid optimization method with general switching strategy for parameter estimation. - Eva Balsa-Canto; Martin Peifer; Julio R. Banga; Jens Timmer; Christian Fleck 001 (BMC Syst. Biol., 2008)

Optimal design and operation of a wastewater purification system. - Lino J. Alvarez-Vázquez; Eva Balsa-Canto; Aurea Martínez (Math. Comput. Simul., 2008)

Real time optimisation for thermal processes. - Míriam R. García; Carlos Vilas; Eva Balsa-Canto; Antonio A. Alonso (ECC, 2009)

DOTcvpSB, a software toolbox for dynamic optimization in systems biology. - Tomás Hirmajer; Eva Balsa-Canto; Julio R. Banga (BMC Bioinform., 2009)

Dynamic Optimization of Chemical and Bio-chemical Processes using an Efficient Global Optimization Metaheuristic. - Jose A. Egea; Eva Balsa-Canto; Julio R. Banga (Simul. Notes Eur., 2009)

An iterative identification procedure for dynamic modeling of biochemical networks. - Eva Balsa-Canto; Antonio A. Alonso; Julio R. Banga (BMC Syst. Biol., 2010)

Dynamic multi-compartmental modelling of metal bioaccumulation in fish: Identifiability implications. - Irene Otero-Muras; Amaya Franco-Uría; Antonio A. Alonso; Eva Balsa-Canto (Environ. Model. Softw., 2010)

AMIGO, a toolbox for advanced model identification in systems biology using global optimization. - Eva Balsa-Canto; Julio R. Banga (Bioinform., 2011)

GenSSI: a software toolbox for structural identifiability analysis of biological models. - Oana Chis; Julio R. Banga; Eva Balsa-Canto (Bioinform., 2011)

On-line estimation in a distributed parameter bioreactor: Application to the gluconic acid production. - Míriam R. García; Carlos Vilas; Eva Balsa-Canto; Velislava N. Lyubenova; Maya N. Ignatova; Antonio A. Alonso (Comput. Chem. Eng., 2011)

Dynamic optimization of distributed biological systems using robust and efficient numerical techniques. - Carlos Vilas; Eva Balsa-Canto; Maria-Sonia G. García; Julio R. Banga; Antonio A. Alonso (BMC Syst. Biol., 2012)

Optimal regulatory programs for the control of metabolic pathways: The case of feedback inhibition. - Gundián M. de Hijas-Liste; Eva Balsa-Canto; Julio R. Banga; Christoph Kaleta (MED, 2013)

Reverse-Engineering Post-Transcriptional Regulation of Gap Genes in Drosophila melanogaster. - Kolja Becker; Eva Balsa-Canto; Damjan Cicin-Sain; Astrid Hoermann; Hilde Janssens; Julio R. Banga; Johannes Jaeger (PLoS Comput. Biol., 2013)

High-Confidence Predictions in Systems Biology Dynamic Models. - Alejandro Fernández Villaverde; Sophia Bongard; Klaus Mauch; Dirk Müller 004; Eva Balsa-Canto; Joachim Schmid 004; Julio R. Banga (PACBB, 2014)

Global dynamic optimization approach to predict activation in metabolic pathways. - Gundián M. de Hijas-Liste; Edda Klipp; Eva Balsa-Canto; Julio R. Banga (BMC Syst. Biol., 2014)

BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology. - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid 004; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes 001; Johannes Jaeger; et al. (CoRR, 2014)

Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation. - Gundián M. de Hijas-Liste; Eva Balsa-Canto; Jan Ewald; Martin Bartl; Pu Li 001; Julio R. Banga; Christoph Kaleta (BMC Bioinform., 2015)

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid 004; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes 001; Johannes Jaeger; et al. (BMC Syst. Biol., 2015)

A consensus approach for estimating the predictive accuracy of dynamic models in biology. - Alejandro Fernández Villaverde; Sophia Bongard; Klaus Mauch; Dirk Müller 004; Eva Balsa-Canto; Joachim Schmid 004; Julio R. Banga (Comput. Methods Programs Biomed., 2015)

AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology. - Eva Balsa-Canto; David Henriques; Attila Gábor; Julio R. Banga (Bioinform., 2016)

A Normalisation Strategy to Optimally Design Experiments in Computational Biology. - Míriam R. García; Antonio A. Alonso; Eva Balsa-Canto (PACBB, 2017)

Optimally designed vs intuition-driven inputs: the study case of promoter activity modelling. - Lucia Bandiera; Varun Kothamachu; Eva Balsa-Canto; Peter S. Swain; Filippo Menolascina (CDC, 2018)

GenSSI 2.0: multi-experiment structural identifiability analysis of SBML models. - Thomas S. Ligon; Fabian Fröhlich; Oana Chis; Julio R. Banga; Eva Balsa-Canto; Jan Hasenauer (Bioinform., 2018)

Optimality and identification of dynamic models in systems biology: an inverse optimal control framework. - Nikolaos Tsiantis; Eva Balsa-Canto; Julio R. Banga (Bioinform., 2018)

Information content analysis reveals desirable aspects of in vivo experiments of a synthetic circuit. - D. Gomez Cabeza; Lucia Bandiera; Eva Balsa-Canto; Filippo Menolascina (CIBCB, 2019)

A two-dimensional multi-species model for different Listeria monocytogenes biofilm structures and its numerical simulation. - Eva Balsa-Canto; Alejandro López-Núñez; Carlos Vázquez 002 (Appl. Math. Comput., 2020)

A New GIMME-Based Heuristic for Compartmentalised Transcriptomics Data Integration. - Diego Troitiño-Jordedo; Lucas Carvalho; David Henriques; Vítor Pereira 001; Miguel Rocha 001; Eva Balsa-Canto (PACBB, 2023)

Integrating Kinetic Models with Genome-Scale Constraints to Explain Yeast-Based Batch Fermentation. - Artai R. Moimenta; Diego Troitiño-Jordedo; Eva Balsa-Canto (CDC, 2024)