Assessment of Conformational Ensemble Sizes Necessary for Specific Resolutions of Coverage of Conformational Space. - Yulia V. Borodina; Evan Bolton; Fabien Fontaine; Stephen H. Bryant (J. Chem. Inf. Model., 2007)

The PubChem chemical structure sketcher. - Wolf-Dietrich Ihlenfeldt; Evan Bolton; Stephen H. Bryant (J. Cheminformatics, 2009)

Database resources of the National Center for Biotechnology Information. - Eric W. Sayers; Tanya Barrett; Dennis A. Benson; Evan Bolton; Stephen H. Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M. Church; Michael DiCuccio; Scott Federhen; Michael Feolo; Lewis Y. Geer; et al. (Nucleic Acids Res., 2010)

An overview of the PubChem BioAssay resource. - Yanli Wang; Evan Bolton; Svetlana Dracheva; Karen Karapetyan; Benjamin A. Shoemaker; Tugba O. Suzek; Jiyao Wang; Jewen Xiao; Jian Zhang 038; Stephen H. Bryant (Nucleic Acids Res., 2010)

PubChem3D: a new resource for scientists. - Evan Bolton; Jie Chen 039; Sunghwan Kim 002; Lianyi Han; Siqian He; Wenyao Shi; Vahan Simonyan; Yan Sun; Paul A. Thiessen; Jiyao Wang; Bo Yu 016; Jian Zhang 038; et al. (J. Cheminformatics, 2011)

PubChem3D: Conformer generation. - Evan Bolton; Sunghwan Kim 002; Stephen H. Bryant (J. Cheminformatics, 2011)

PubChem3D: Diversity of shape. - Evan Bolton; Sunghwan Kim 002; Stephen H. Bryant (J. Cheminformatics, 2011)

PubChem3D: Similar conformers. - Evan Bolton; Sunghwan Kim 002; Stephen H. Bryant (J. Cheminformatics, 2011)

PubChem3D: Shape compatibility filtering using molecular shape quadrupoles. - Sunghwan Kim 002; Evan Bolton; Stephen H. Bryant (J. Cheminformatics, 2011)

PubChem3D: Biologically relevant 3-D similarity. - Sunghwan Kim 002; Evan Bolton; Stephen H. Bryant (J. Cheminformatics, 2011)

Automated annotation of chemical names in the literature with tunable accuracy. - Jun D. Zhang; Lewis Y. Geer; Evan Bolton; Stephen H. Bryant (J. Cheminformatics, 2011)

Database resources of the National Center for Biotechnology Information. - Eric W. Sayers; Tanya Barrett; Dennis A. Benson; Evan Bolton; Stephen H. Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M. Church; Michael DiCuccio; Scott Federhen; Michael Feolo; Ian M. Fingerman; et al. (Nucleic Acids Res., 2011)

Effects of multiple conformers per compound upon 3-D similarity search and bioassay data analysis. - Sunghwan Kim 002; Evan Bolton; Stephen H. Bryant (J. Cheminformatics, 2012)

Database resources of the National Center for Biotechnology Information. - Eric W. Sayers; Tanya Barrett; Dennis A. Benson; Evan Bolton; Stephen H. Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M. Church; Michael DiCuccio; Scott Federhen; Michael Feolo; Ian M. Fingerman; et al. (Nucleic Acids Res., 2012)

PubChem's BioAssay Database. - Yanli Wang; Jewen Xiao; Tugba O. Suzek; Jian Zhang 038; Jiyao Wang; Zhigang Zhou; Lianyi Han; Karen Karapetyan; Svetlana Dracheva; Benjamin A. Shoemaker; Evan Bolton; Asta Gindulyte; et al. (Nucleic Acids Res., 2012)

PubChem: atom environments for molecule standardization. - Volker Hähnke; Evan Bolton; Stephen H. Bryant (J. Cheminformatics, 2013)

PubChem3D: conformer ensemble accuracy. - Sunghwan Kim 002; Evan Bolton; Stephen H. Bryant (J. Cheminformatics, 2013)

Exposing Provenance Metadata Using Different RDF Models. - Gang Fu; Evan Bolton; Núria Queralt-Rosinach; Laura Inés Furlong; Vinh Nguyen; Amit P. Sheth; Olivier Bodenreider; Michel Dumontier (SWAT4LS, 2015)

On Reasoning with RDF Statements about Statements using Singleton Property Triples. - Vinh Nguyen; Olivier Bodenreider; Krishnaprasad Thirunarayan; Gang Fu; Evan Bolton; Núria Queralt Rosinach; Laura Inés Furlong; Michel Dumontier; Amit P. Sheth (CoRR, 2015)

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. - Gang Fu; Colin R. Batchelor; Michel Dumontier; Janna Hastings; Egon L. Willighagen; Evan Bolton (J. Cheminformatics, 2015)

PubChem atom environments. - Volker Hähnke; Evan Bolton; Stephen H. Bryant (J. Cheminformatics, 2015)

PubChem structure-activity relationship (SAR) clusters. - Sunghwan Kim 002; Lianyi Han; Bo Yu 016; Volker Hähnke; Evan Bolton; Stephen H. Bryant (J. Cheminformatics, 2015)

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data. - Warren A. Kibbe; Cesar Arze; Victor Felix; Elvira Mitraka; Evan Bolton; Gang Fu; Christopher J. Mungall; Janos X. Binder; James Malone; Drashtti Vasant; Helen E. Parkinson; Lynn M. Schriml (Nucleic Acids Res., 2015)

PUG-SOAP and PUG-REST: web services for programmatic access to chemical information in PubChem. - Sunghwan Kim 002; Paul A. Thiessen; Evan Bolton; Stephen H. Bryant (Nucleic Acids Res., 2015)

Predicting drug target interactions using meta-path-based semantic network analysis. - Gang Fu; Ying Ding 001; Abhik Seal; Bin Chen 002; Yizhou Sun; Evan Bolton (BMC Bioinform., 2016)

Literature information in PubChem: associations between PubChem records and scientific articles. - Sunghwan Kim 002; Paul A. Thiessen; Tiejun Cheng; Bo Yu 016; Benjamin A. Shoemaker; Jiyao Wang; Evan Bolton; Yanli Wang; Stephen H. Bryant (J. Cheminformatics, 2016)

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy. - Yannick Djoumbou; Roman Eisner; Craig Knox; Leonid L. Chepelev; Janna Hastings; Gareth I. Owen; Eoin Fahy; Christoph Steinbeck; Shankar Subramanian; Evan Bolton; Russell Greiner; David S. Wishart (J. Cheminformatics, 2016)

Similar compounds versus similar conformers: complementarity between PubChem 2-D and 3-D neighboring sets. - Sunghwan Kim 002; Evan Bolton; Stephen H. Bryant (J. Cheminformatics, 2016)

PubChem Substance and Compound databases. - Sunghwan Kim 002; Paul A. Thiessen; Evan Bolton; Jie Chen 039; Gang Fu; Asta Gindulyte; Lianyi Han; Jane He; Siqian He; Benjamin A. Shoemaker; Jiyao Wang; Bo Yu 016; et al. (Nucleic Acids Res., 2016)

PubChem chemical structure standardization. - Volker Hähnke; Sunghwan Kim 002; Evan Bolton (J. Cheminformatics, 2018)

An update on PUG-REST: RESTful interface for programmatic access to PubChem. - Sunghwan Kim 002; Paul A. Thiessen; Tiejun Cheng; Bo Yu 016; Evan Bolton (Nucleic Acids Res., 2018)

Singleton Property Graph: Adding A Semantic Web Abstraction Layer to Graph Databases. - Vinh Nguyen; Hong Yung Yip; Harsh Thakkar; Qingliang Li; Evan Bolton; Olivier Bodenreider (BlockSW/CKG@ISWC, 2019)

PUG-View: programmatic access to chemical annotations integrated in PubChem. - Sunghwan Kim 002; Paul A. Thiessen; Tiejun Cheng; Jian Zhang 038; Asta Gindulyte; Evan Bolton (J. Cheminformatics, 2019)

PubChem 2019 update: improved access to chemical data. - Sunghwan Kim 002; Jie Chen 039; Tiejun Cheng; Asta Gindulyte; Jia He 008; Siqian He; Qingliang Li; Benjamin A. Shoemaker; Paul A. Thiessen; Bo Yu 016; Leonid Zaslavsky; Jian Zhang 038; et al. (Nucleic Acids Res., 2019)

Database resources of the National Center for Biotechnology Information. - Eric W. Sayers; Richa Agarwala; Evan Bolton; J. Rodney Brister; Kathi Canese; Karen Clark; Ryan Connor; Nicolas Fiorini; Kathryn Funk; Timothy Hefferon; J. Bradley Holmes; Sunghwan Kim 002; et al. (Nucleic Acids Res., 2019)

CTO: A Community-Based Clinical Trial Ontology and Its Applications in PubChemRDF and SCAIView. - Asiyah Yu Lin; Stephan Gebel; Qingliang Leon Li; Sumit Madan; Johannes Darms; Evan Bolton; Barry Smith 001; Martin Hofmann-Apitius; Yongqun Oliver He; Alpha Tom Kodamullil (ICBO/ODLS, 2020)

BioHackathon 2015: Semantics of data for life sciences and reproducible research. - Rutger A. Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; et al. (F1000Research, 2020)

Plant Reactome: a knowledgebase and resource for comparative pathway analysis. - Sushma Naithani; Parul Gupta; Justin Preece; Peter D'Eustachio; Justin Elser; Priyanka Garg; Daemon A. Dikeman; Jason Kiff; Justin Cook; Andrew Olson; Sharon Wei; Marcela K. Tello-Ruiz; et al. (Nucleic Acids Res., 2020)

Database resources of the National Center for Biotechnology Information. - Eric W. Sayers; Jeffrey Beck; J. Rodney Brister; Evan Bolton; Kathi Canese; Donald C. Comeau; Kathryn Funk; Anne Ketter; Sunghwan Kim 002; Avi Kimchi; Paul A. Kitts; Anatoliy Kuznetsov; et al. (Nucleic Acids Res., 2020)

Ten simple rules to run a successful BioHackathon. - Leyla J. García; Erick Antezana; Alexander García Castro; Evan Bolton; Rafael C. Jiménez; Pjotr Prins; Juan M. Banda; Toshiaki Katayama (PLoS Comput. Biol., 2020)

Discovering and Summarizing Relationships Between Chemicals, Genes, Proteins, and Diseases in PubChem. - Leonid Zaslavsky; Tiejun Cheng; Asta Gindulyte; Siqian He; Sunghwan Kim 002; Qingliang Li; Paul A. Thiessen; Bo Yu 016; Evan Bolton (Frontiers Res. Metrics Anal., 2021)

InChI version 1.06: now more than 99.99% reliable. - Jonathan M. Goodman; Igor V. Pletnev; Paul A. Thiessen; Evan Bolton; Stephen R. Heller (J. Cheminformatics, 2021)

FAIR chemical structures in the Journal of Cheminformatics. - Emma Schymanski; Evan Bolton (J. Cheminformatics, 2021)

Empowering large chemical knowledge bases for exposomics: PubChemLite meets MetFrag. - Emma Schymanski; Todor Kondic; Steffen Neumann; Paul A. Thiessen; Jian Zhang 038; Evan Bolton (J. Cheminformatics, 2021)

PubChem in 2021: new data content and improved web interfaces. - Sunghwan Kim 002; Jie Chen 039; Tiejun Cheng; Asta Gindulyte; Jia He 008; Siqian He; Qingliang Li; Benjamin A. Shoemaker; Paul A. Thiessen; Bo Yu 016; Leonid Zaslavsky; Jian Zhang 038; et al. (Nucleic Acids Res., 2021)

Database resources of the National Center for Biotechnology Information. - Eric W. Sayers; Jeffrey Beck; Evan Bolton; Devon Bourexis; James R. Brister; Kathi Canese; Donald C. Comeau; Kathryn Funk; Sunghwan Kim 002; William Klimke; Aron Marchler-Bauer; Melissa J. Landrum; et al. (Nucleic Acids Res., 2021)

CAS Common Chemistry in 2021: Expanding Access to Trusted Chemical Information for the Scientific Community. - Andrea Jacobs; Dustin Williams; Katherine Hickey; Nathan Patrick; Antony J. Williams; Stuart J. Chalk; Leah McEwen; Egon L. Willighagen; Martin Walker; Evan Bolton; Gabriel Sinclair; Adam Sanford (J. Chem. Inf. Model., 2022)

Database resources of the national center for biotechnology information. - Eric W. Sayers; Evan E. Bolton; J. Rodney Brister; Kathi Canese; Jessica Chan; Donald C. Comeau; Ryan Connor; Kathryn Funk; Chris Kelly; Sunghwan Kim 002; Tom Madej; Aron Marchler-Bauer; et al. (Nucleic Acids Res., 2022)

Resource Description Framework (RDF) Modeling of Named Entity Co-occurrences Derived from Biomedical Literature in the PubChemRDF. - Qingliang Li; Sunghwan Kim 002; Leonid Zaslavsky; Tiejun Cheng; Bo Yu 016; Evan E. Bolton (SWAT4HCLS, 2023)

PubChem 2023 update. - Sunghwan Kim 002; Jie Chen 039; Tiejun Cheng; Asta Gindulyte; Jia He 008; Siqian He; Qingliang Li; Benjamin A. Shoemaker; Paul A. Thiessen; Bo Yu 016; Leonid Zaslavsky; Jian Zhang 038; et al. (Nucleic Acids Res., 2023)

Database resources of the National Center for Biotechnology Information in 2023. - Eric W. Sayers; Evan E. Bolton; J. Rodney Brister; Kathi Canese; Jessica Chan; Donald C. Comeau; Catherine M. Farrell; Michael Feldgarden; Anna M. Fine; Kathryn Funk; Eneida Hatcher; Sivakumar Kannan; et al. (Nucleic Acids Res., 2023)

A workflow for deriving chemical entities from crystallographic data and its application to the Crystallography Open Database. - Antanas Vaitkus; Andrius Merkys; Thomas Sander; Miguel Quirós; Paul A. Thiessen; Evan E. Bolton; Saulius Grazulis (J. Cheminformatics, 2023)

Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy. - Karina Martinez; Jon Agirre; Yukie Akune; Kiyoko F. Aoki-Kinoshita; Cecilia N. Arighi; Kristian B. Axelsen; Evan Bolton; Emily Bordeleau; Nathan J. Edwards; Elisa Fadda; Ten Feizi; Catherine A. Hayes; et al. (Database J. Biol. Databases Curation, 2024)

PubChem synonym filtering process using crowdsourcing. - Sunghwan Kim 002; Bo Yu 016; Qingliang Li; Evan E. Bolton (J. Cheminformatics, 2024)

A resource description framework (RDF) model of named entity co-occurrences in biomedical literature and its integration with PubChemRDF. - Qingliang Li; Sunghwan Kim 002; Leonid Zaslavsky; Tiejun Cheng; Bo Yu 016; Evan E. Bolton (J. Cheminformatics, 2025)