Rfam 12.0: updates to the RNA families database. - Eric P. Nawrocki; Sarah W. Burge; Alex Bateman; Jennifer Daub; Ruth Y. Eberhardt; Sean R. Eddy; Evan W. Floden; Paul P. Gardner; Thomas A. Jones; John G. Tate; Robert D. Finn (Nucleic Acids Res., 2015)

PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases. - Evan W. Floden; Paolo Di Tommaso; Maria Chatzou; Cedrik Magis; Cédric Notredame; Jia-Ming Chang (Nucleic Acids Res., 2016)

Incorporating alignment uncertainty into Felsenstein's phylogenetic bootstrap to improve its reliability. - Jia-Ming Chang; Evan W. Floden; Javier Herrero; Olivier Gascuel; Paolo Di Tommaso; Cédric Notredame (Bioinform., 2021)

Approaches for containerized scientific workflows in cloud environments with applications in life science. - Ola Spjuth; Marco Capuccini; Matteo Carone; Anders Larsson; Wesley Schaal; Jon Ander Novella; Oliver Stein; Morgan Ekmefjord; Paolo Di Tommaso; Evan W. Floden; Cédric Notredame; Pablo A. Moreno; et al. (F1000Research, 2021)