OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data Analysis. - Greg Finak; Jacob Frelinger; Wenxin Jiang 002; Evan W. Newell; John Ramey; Mark M. Davis; Spyros A. Kalams; Stephen C. De Rosa; Raphael Gottardo (PLoS Comput. Biol., 2014)

Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline. - Hao Chen; Mai Chan Lau; Michael Thomas Wong; Evan W. Newell; Michael Poidinger; Jinmiao Chen (PLoS Comput. Biol., 2016)

Reverse-engineering flow-cytometry gating strategies for phenotypic labelling and high-performance cell sorting. - Etienne Becht; Yannick Simoni; Elaine Coustan-Smith; Maximilien Evrard; Yang Cheng; Lai Guan Ng; Dario Campana; Evan W. Newell (Bioinform., 2019)