Exploring Fibrotic Disease Networks to Identify Common Molecular Mechanisms with IPF. - Evangelos Karatzas; Alex Delis; George Kolios; George M. Spyrou (BIBE, 2019)

ChemBioServer 2.0: an advanced web server for filtering, clustering and networking of chemical compounds facilitating both drug discovery and repurposing. - Evangelos Karatzas; Juan Eiros Zamora; Emmanouil Athanasiadis; Dimitris Dellis; Zoe Cournia; George M. Spyrou (Bioinform., 2020)

PathWalks: identifying pathway communities using a disease-related map of integrated information. - Evangelos Karatzas; Margarita Zachariou; Marilena M. Bourdakou; George Minadakis; Anastasis Oulas; George Kolios; Alex Delis; George M. Spyrou (Bioinform., 2020)

Multi-omics data integration and network-based analysis drives a multiplex drug repurposing approach to a shortlist of candidate drugs against COVID-19. - Marios Tomazou; Marilena M. Bourdakou; George Minadakis; Margarita Zachariou; Anastasis Oulas; Evangelos Karatzas; Eleni M. Loizidou; Andrea C. Kakouri; Christiana C. Christodoulou; Kyriaki Savva; Maria Zanti; Anna Onisiforou; et al. (Briefings Bioinform., 2021)

VICTOR: A visual analytics web application for comparing cluster sets. - Evangelos Karatzas; Maria Gkonta; Joana Hotova; Fotis A. Baltoumas; Panagiota I. Kontou; Christopher J. Bobotsis; Pantelis G. Bagos; Georgios A. Pavlopoulos (Comput. Biol. Medicine, 2021)

Arena3Dweb: interactive 3D visualization of multilayered networks. - Evangelos Karatzas; Fotis A. Baltoumas; Nikolaos A. Panayiotou; Reinhard Schneider 002; Georgios A. Pavlopoulos (Nucleic Acids Res., 2021)

NORMA: The Network Makeup Artist - A Web Tool for Network Annotation Visualization. - Mikaela Koutrouli; Evangelos Karatzas; Katerina Papanikolopoulou; Georgios A. Pavlopoulos (Genom. Proteom. Bioinform., 2022)

Exploring microbial functional biodiversity at the protein family level - From metagenomic sequence reads to annotated protein clusters. - Fotis A. Baltoumas; Evangelos Karatzas; David Páez-Espino; Nefeli K. Venetsianou; Eleni Aplakidou; Anastasis Oulas; Robert D. Finn; Sergey Ovchinnikov; Evangelos Pafilis; Nikos Kyrpides; Georgios A. Pavlopoulos (Frontiers Bioinform., 2023)

Flame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources. - Evangelos Karatzas; Fotis A. Baltoumas; Eleni Aplakidou; Panagiota I. Kontou; Panos Stathopoulos; Leonidas Stefanis; Pantelis G. Bagos; Georgios A. Pavlopoulos (Bioinform., 2023)