Flux balance analysis and its applications. - Balázs Papp; Evangelos Simeonidis (BMC Syst. Biol., 2007)

KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways. - Irena Spasic; Evangelos Simeonidis; Hanan L. Messiha; Norman W. Paton; Douglas B. Kell (Bioinform., 2009)

Systematic integration of experimental data and models in systems biology. - Peter Li; Joseph O. Dada; Daniel Jameson; Irena Spasic; Neil Swainston; Kathleen Carroll; Warwick B. Dunn; Farid Khan; Naglis Malys; Hanan L. Messiha; Evangelos Simeonidis; Dieter Weichart; et al. (BMC Bioinform., 2010)

Further developments towards a genome-scale metabolic model of yeast. - Paul D. Dobson; Kieran Smallbone; Daniel Jameson; Evangelos Simeonidis; Karin Lanthaler; Pinar Pir; Chuan Lu; Neil Swainston; Warwick B. Dunn; Paul Fisher; Duncan Hull; Marie Brown; et al. (BMC Syst. Biol., 2010)

Towards a genome-scale kinetic model of cellular metabolism. - Kieran Smallbone; Evangelos Simeonidis; Neil Swainston; Pedro Mendes 001 (BMC Syst. Biol., 2010)

ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions. - Brendan King; Terry Farrah; Matthew A. Richards; Michael B. Mundy; Evangelos Simeonidis; Nathan D. Price 001 (Bioinform., 2018)