Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes. - Margaret Biswas; Rolf Apweiler; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Thomas M. Oinn; Isabelle Phan; Evgeni M. Zdobnov (German Conference on Bioinformatics, 2000)

A collection of well characterised integral membrane proteins. - Steffen Möller; Evgenia V. Kriventseva; Rolf Apweiler (Bioinform., 2000)

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes. - Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Isabelle Phan; Evgeni M. Zdobnov (Nucleic Acids Res., 2001)

CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins. - Evgenia V. Kriventseva; Wolfgang Fleischmann; Evgeni M. Zdobnov; Rolf Apweiler (Nucleic Acids Res., 2001)

Automation of Protein Sequence Characterization and Its Application in Whole Proteome Analysis. - Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Evgenia V. Kriventseva; Nicola J. Mulder (Gene Regulations and Metabolism, 2002)

Theoretical analysis of alternative splice forms using computational methods. - Stéphanie Boué; Martin Vingron; Evgenia V. Kriventseva; Ina Koch (ECCB, 2002)

Applications of InterPro in Protein Annotation and Genome Analysis. - Margaret Biswas; Joseph F. O'Rourke; Evelyn Camon; Gillian Fraser; Alexander Kanapin; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Isabelle Phan; Florence Servant; et al. (Briefings Bioinform., 2002)

Interactive InterPro-based comparisons of proteins in whole genomes. - Alexander Kanapin; Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Thomas M. Oinn; Isabelle Phan; Florence Servant; et al. (Bioinform., 2002)

Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters. - Evgenia V. Kriventseva; Florence Servant; Rolf Apweiler (Nucleic Acids Res., 2003)

The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. - Manuela Pruess; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Isabelle Phan; Florence Servant; Rolf Apweiler (Nucleic Acids Res., 2003)

OrthoDB: the hierarchical catalog of eukaryotic orthologs. - Evgenia V. Kriventseva; Nazim Rahman; Octavio Espinosa; Evgeni M. Zdobnov (Nucleic Acids Res., 2008)

miROrtho: computational survey of microRNA genes. - Daniel Gerlach; Evgenia V. Kriventseva; Nazim Rahman; Charles E. Vejnar; Evgeni M. Zdobnov (Nucleic Acids Res., 2009)

OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011. - Robert M. Waterhouse; Evgeny M. Zdobnov; Fredrik Tegenfeldt; Jia Li; Evgenia V. Kriventseva (Nucleic Acids Res., 2011)

OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. - Robert M. Waterhouse; Fredrik Tegenfeldt; Jia Li; Evgeny M. Zdobnov; Evgenia V. Kriventseva (Nucleic Acids Res., 2013)

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. - Felipe A. Simão; Robert M. Waterhouse; Panagiotis Ioannidis 001; Evgenia V. Kriventseva; Evgeny M. Zdobnov (Bioinform., 2015)

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software. - Evgenia V. Kriventseva; Fredrik Tegenfeldt; Tom J. Petty; Robert M. Waterhouse; Felipe A. Simão; Igor A. Pozdnyakov; Panagiotis Ioannidis 001; Evgeny M. Zdobnov (Nucleic Acids Res., 2015)

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. - Evgeny M. Zdobnov; Fredrik Tegenfeldt; Dmitry Kuznetsov; Robert M. Waterhouse; Felipe A. Simão; Panagiotis Ioannidis 001; Mathieu Seppey; Alexis Loetscher; Evgenia V. Kriventseva (Nucleic Acids Res., 2017)

OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs. - Evgenia V. Kriventseva; Dmitry Kuznetsov; Fredrik Tegenfeldt; Mosè Manni; Renata Dias; Felipe A. Simão; Evgeny M. Zdobnov (Nucleic Acids Res., 2019)

OrthoDB in 2020: evolutionary and functional annotations of orthologs. - Evgeny M. Zdobnov; Dmitry Kuznetsov; Fredrik Tegenfeldt; Mosè Manni; Matthew Berkeley; Evgenia V. Kriventseva (Nucleic Acids Res., 2021)

OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity. - Dmitry Kuznetsov; Fredrik Tegenfeldt; Mosè Manni; Mathieu Seppey; Matthew Berkeley; Evgenia V. Kriventseva; Evgeny M. Zdobnov (Nucleic Acids Res., 2023)