SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data. - Evguenia Kopylova; Laurent Noé; Hélène Touzet (Bioinform., 2012)

A comparison of index-based lempel-Ziv LZ77 factorization algorithms. - Anisa Al-Hafeedh; Maxime Crochemore; Lucian Ilie; Evguenia Kopylova; William F. Smyth; German Tischler; Munina Yusufu (ACM Comput. Surv., 2012)

The three squares lemma revisited. - Evguenia Kopylova; William F. Smyth (J. Discrete Algorithms, 2012)

New algorithmic and bioinformatic approaches for the analysis of data from high throughput sequencing. (Algorithmes bio-informatiques pour l'analyse de données de séquençage à haut débit). - Evguenia Kopylova (2013)