Ewy A Mathé

According to our database, Ewy A Mathé authored at least 21 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Clustering rare diseases within an ontology-enriched knowledge graph.

Jaleal Sanjak, Jessica Binder, Arjun Singh Yadaw, Qian Zhu, Ewy A Mathé

J. Am. Medical Informatics Assoc., December, 2023

Pharos 2023: an integrated resource for the understudied human proteome.

Keith J. Kelleher, Timothy Sheils, Stephen L. Mathias, Jeremy J. Yang, Vincent T. Metzger, Vishal B. Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dusica Vidovic, Stephan C. Schürer, Jayme Holmes, Karlie R. Sharma, Ajay Pillai, Cristian Bologa, Jeremy S. Edwards, Ewy A Mathé, Tudor I. Oprea

Nucleic Acids Res., January, 2023

RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes.

John C. Braisted, Andrew Patt, Cole Tindall, Timothy Sheils, Jorge Neyra, Kyle Spencer, Tara Eicher, Ewy A Mathé

Bioinform., January, 2023

User Centered Rare Disease Clinical Trial Knowledge Graph (RCTKG).

Jeremy Parker Yang, Devon Leadman, Richard M. Ballew, Eric Sid, Yanji Xu, Ewy A Mathé, Qian Zhu

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

2022

NCATS Inxight Drugs: a comprehensive and curated portal for translational research.

Vishal B. Siramshetty, Ivan Grishagin, Ðac-Trung Nguyen, Tyler Peryea, Yulia Skovpen, Oleg Stroganov, Daniel Katzel, Timothy Sheils, Ajit Jadhav, Ewy A Mathé, Noel Southall

Nucleic Acids Res., 2022

A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research.

Gergely Zahoránszky-Köhalmi, Vishal B. Siramshetty, Praveen Kumar, Manideep Gurumurthy, Busola Grillo, Biju Mathew, Dimitrios Metaxatos, Mark Backus, Tim Mierzwa, Reid Simon, Ivan Grishagin, Laura Brovold, Ewy A Mathé, Matthew D. Hall, Samuel G. Michael, Alexander G. Godfrey, Jordi Mestres, Lars Juhl Jensen, Tudor I. Oprea

J. Chem. Inf. Model., 2022

Rare disease-based scientific annotation knowledge graph.

Qian Zhu, Chunxu Qu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Ðac-Trung Nguyen, Eric Sid, Ewy A Mathé, Yanji Xu

Frontiers Artif. Intell., 2022

Computational Metabolomics: From Spectra to Knowledge (Dagstuhl Seminar 22181).

Corey Broeckling, Timothy M. D. Ebbels, Ewy A Mathé, Nicola Zamboni, Cecilia Wieder

Dagstuhl Reports, 2022

2021

TCRD and Pharos 2021: mining the human proteome for disease biology.

Timothy Sheils, Stephen L. Mathias, Keith J. Kelleher, Vishal B. Siramshetty, Dac-Trung Nguyen, Cristian Bologa, Lars Juhl Jensen, Dusica Vidovic, Amar Koleti, Stephan C. Schürer, Anna Waller, Jeremy J. Yang, Jayme Holmes, Giovanni Bocci, Noel Southall, Poorva Dharkar, Ewy A Mathé, Anton Simeonov, Tudor I. Oprea

Nucleic Acids Res., 2021

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements.

Tara Eicher, Jany Chan, Han Luu, Raghu Machiraju, Ewy A Mathé

BMC Bioinform., 2021

Network analyses in microbiome based on high-throughput multi-omics data.

Zhaoqian Liu, Anjun Ma, Ewy A Mathé, Marlena Merling, Qin Ma, Bingqiang Liu

Briefings Bioinform., 2021

Scientific Evidence Based Knowledge Graph in Rare Diseases.

Qian Zhu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Yanji Xu, Dac-Trung Nguyen, Ewy A Mathé, Eric Sid

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions.

Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A Mathé

BMC Medical Informatics Decis. Mak., March, 2020

Correction to: The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions.

Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A Mathé

BMC Medical Informatics Decis. Mak., 2020

Correction to: The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases.

Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A Mathé, Lai Wei, Kai Wang

BMC Bioinform., 2020

2019

The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases.

Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A Mathé, Lai Wei, Kai Wang

BMC Bioinform., 2019

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge.

Tara Eicher, Andrew Patt, Esko Kautto, Raghu Machiraju, Ewy A Mathé, Yan Zhang

BMC Bioinform., 2019

2018

Matchmaking in Bioinformatics.

Ewy A Mathé, Ben Busby, Helen Piontkivska, Team of Developers

F1000Research, 2018

IntLIM: integration using linear models of metabolomics and gene expression data.

Jalal K. Siddiqui, Elizabeth Baskin, Mingrui Liu, Carmen Z. Cantemir-Stone, Bofei Zhang, Russell Bonneville, Joseph P. McElroy, Kevin R. Coombes, Ewy A Mathé

BMC Bioinform., 2018

2017

ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data.

Elizabeth Baskin, Rick Farouni, Ewy A Mathé

Bioinform., 2017

2008

Structure Based Functional Analysis of Bacteriophage f1 Gene V Protein.

Majid Masso, Ewy A Mathé, Nida Parvez, Kahkeshan Hijazi, Iosif I. Vaisman

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008