Improved DST Cryptanalysis of IDEA. - Eyüp Serdar Ayaz; Ali Aydin Selçuk (Selected Areas in Cryptography, 2006)

Large-Scale Signaling Network Reconstruction. - Seyedsasan Hashemikhabir; Eyüp Serdar Ayaz; Yusuf Kavurucu; Tolga Can; Tamer Kahveci (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

An Iterative Refinement Scheme of Dominating Guards and Witnesses for Art Gallery Problems. - Eyüp Serdar Ayaz; Alper Üngör (CCCG, 2016)