EigenFold: Generative Protein Structure Prediction with Diffusion Models. - Bowen Jing; Ezra Erives; Peter Pao-Huang; Gabriele Corso; Bonnie Berger; Tommi S. Jaakkola (CoRR, 2023)

Verlet Flows: Exact-Likelihood Integrators for Flow-Based Generative Models. - Ezra Erives; Bowen Jing; Tommi S. Jaakkola (CoRR, 2024)

An Introduction to Flow Matching and Diffusion Models. - Peter Holderrieth; Ezra Erives (CoRR, 2025)