Model-based branching point detection in single-cell data by K-branches clustering. - Nikolaos-Kosmas Chlis; F. Alexander Wolf; Fabian J. Theis (Bioinform., 2017)

Conditional out-of-sample generation for unpaired data using trVAE. - Mohammad Lotfollahi; Mohsen Naghipourfar; Fabian J. Theis; F. Alexander Wolf (CoRR, 2019)

Conditional out-of-distribution generation for unpaired data using transfer VAE. - Mohammad Lotfollahi; Mohsen Naghipourfar; Fabian J. Theis; F. Alexander Wolf (Bioinform., 2020)

anndata: Access and store annotated data matrices. - Isaac Virshup; Sergei Rybakov; Fabian J. Theis; Philipp Angerer; F. Alexander Wolf (J. Open Source Softw., 2024)