Predicting SUMOylation Sites. - Denis C. Bauer; Fabian A. Buske; Mikael Bodén (PRIB, 2008)

Detecting sequence and structure homology via an integrative kernel: A case-study in recognizing enzymes. - Isye Arieshanti; Mikael Bodén; Stefan Maetschke; Fabian A. Buske (CIBCB, 2009)

MEME SUITE: tools for motif discovery and searching. - Timothy L. Bailey; Mikael Bodén; Fabian A. Buske; Martin C. Frith; Charles E. Grant; Luca Clementi; Jingyuan Ren; Wilfred W. Li; William Stafford Noble (Nucleic Acids Res., 2009)

It's about time: Signal recognition in staged models of protein translocation. - Fabian A. Buske; Stefan Maetschke; Mikael Bodén (Pattern Recognit., 2009)

Assigning roles to DNA regulatory motifs using comparative genomics. - Fabian A. Buske; Mikael Bodén; Denis C. Bauer; Timothy L. Bailey (Bioinform., 2010)

Dual-functioning transcription factors in the developmental gene network of Drosophila melanogaster. - Denis C. Bauer; Fabian A. Buske; Timothy L. Bailey (BMC Bioinform., 2010)

Predicting SUMOylation sites in developmental transcription factors of Drosophila melanogaster. - Denis C. Bauer; Fabian A. Buske; Timothy L. Bailey; Mikael Bodén (Neurocomputing, 2010)

Sorting the nuclear proteome. - Denis C. Bauer; Kai Willadsen; Fabian A. Buske; Kim-Anh Lê Cao; Timothy L. Bailey; Graham Dellaire; Mikael Bodén (Bioinform., 2011)

Epigenetic priors for identifying active transcription factor binding sites. - Gabriel Cuéllar-Partida; Fabian A. Buske; Robert C. McLeay; Tom Whitington; William Stafford Noble; Timothy L. Bailey (Bioinform., 2012)

Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci. - Fabian A. Buske; Denis C. Bauer; John S. Mattick; Timothy L. Bailey (Bioinform., 2013)

NGSANE: a lightweight production informatics framework for high-throughput data analysis. - Fabian A. Buske; Hugh J. French; Martin A. Smith; Susan J. Clark; Denis C. Bauer (Bioinform., 2014)