Radial Basis Function Approximations of Bayesian Parameter Posterior Densities for Uncertainty Analysis. - Fabian Fröhlich; Sabrina Hross; Fabian J. Theis; Jan Hasenauer (CMSB, 2014)

Uncertainty Analysis for Non-identifiable Dynamical Systems: Profile Likelihoods, Bootstrapping and More. - Fabian Fröhlich; Fabian J. Theis; Jan Hasenauer (CMSB, 2014)

Inference for Stochastic Chemical Kinetics Using Moment Equations and System Size Expansion. - Fabian Fröhlich; Philipp Thomas; Atefeh Kazeroonian; Fabian J. Theis; Ramon Grima; Jan Hasenauer (PLoS Comput. Biol., 2016)

Parameter estimation for dynamical systems with discrete events and logical operations. - Fabian Fröhlich; Fabian J. Theis; Joachim O. Rädler; Jan Hasenauer (Bioinform., 2017)

Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks. - Fabian Fröhlich; Barbara Kaltenbacher; Fabian J. Theis; Jan Hasenauer (PLoS Comput. Biol., 2017)

GenSSI 2.0: multi-experiment structural identifiability analysis of SBML models. - Thomas S. Ligon; Fabian Fröhlich; Oana Chis; Julio R. Banga; Eva Balsa-Canto; Jan Hasenauer (Bioinform., 2018)

Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis. - Paul Stapor; Fabian Fröhlich; Jan Hasenauer (Bioinform., 2018)

PESTO: Parameter EStimation TOolbox. - Paul Stapor; Daniel Weindl; Benjamin Ballnus; Sabine Hug; Carolin Loos; Anna Fiedler; Sabrina Krause; Sabrina Hross; Fabian Fröhlich; Jan Hasenauer (Bioinform., 2018)

Supplementary Code to Multi-Experiment Nonlinear Mixed Effect Modeling of Single-Cell Translation Kinetics after Transfection. - Fabian Fröhlich; Anita Reiser; Laura Fink; Daniel Woschée; Thomas S. Ligon; Fabian J. Theis; Joachim O. Rädler; Jan Hasenauer (Zenodo, 2018)

Benchmarking optimization methods for parameter estimation in large kinetic models. - Alejandro Fernández Villaverde; Fabian Fröhlich; Daniel Weindl; Jan Hasenauer; Julio R. Banga (Bioinform., 2019)

Efficient parameterization of large-scale dynamic models based on relative measurements. - Leonard Schmiester; Yannik Schälte; Fabian Fröhlich; Jan Hasenauer; Daniel Weindl (Bioinform., 2020)

AMICI: high-performance sensitivity analysis for large ordinary differential equation models. - Fabian Fröhlich; Daniel Weindl; Yannik Schälte; Dilan Pathirana; Lukasz Paszkowski; Glenn Terje Lines; Paul Stapor; Jan Hasenauer (Bioinform., 2021)

PEtab - Interoperable specification of parameter estimation problems in systems biology. - Leonard Schmiester; Yannik Schälte; Frank T. Bergmann; Tacio Camba; Erika Dudkin; Janine Egert; Fabian Fröhlich; Lara Fuhrmann; Adrian L. Hauber; Svenja Kemmer; Polina A. Lakrisenko; Carolin Loos; et al. (PLoS Comput. Biol., 2021)

Combination treatment optimization using a pan-cancer pathway model. - Robin Schmucker; Gabriele Farina; James R. Faeder; Fabian Fröhlich; Ali Sinan Saglam; Tuomas Sandholm (PLoS Comput. Biol., 2021)

Designing Effective Playful Collaborative Science Learning in VR. - Jan L. Plass; Ken Perlin; Agnieszka Roginska; Chris Hovey; Fabian Fröhlich; Aniol Saurina Maso; Alvaro Olsen; Zhenyi He; Robert Pahle; Sounak Ghosh (JCSG, 2022)

A protocol for dynamic model calibration. - Alejandro F. Villaverde; Dilan Pathirana; Fabian Fröhlich; Jan Hasenauer; Julio R. Banga (Briefings Bioinform., 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

Fides: Reliable trust-region optimization for parameter estimation of ordinary differential equation models. - Fabian Fröhlich; Peter K. Sorger (PLoS Comput. Biol., 2022)

Does Digital Game Play Affect Social/Emotional Child Wellbeing? - Jan L. Plass; Bruce D. Homer; Meagan Bromley; Fabian Fröhlich; Yuli Shao; Jessica Young (JCSG, 2023)

Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks. - Polina A. Lakrisenko; Paul Stapor; Stephan Grein; Lukasz Paszkowski; Dilan Pathirana; Fabian Fröhlich; Glenn Terje Lines; Daniel Weindl; Jan Hasenauer (PLoS Comput. Biol., 2023)

pyPESTO: a modular and scalable tool for parameter estimation for dynamic models. - Yannik Schälte; Fabian Fröhlich; Paul J. Jost; Jakob Vanhoefer; Dilan Pathirana; Paul Stapor; Polina A. Lakrisenko; Dantong Wang; Elba Raimúndez-Álvarez; Simon Merkt; Leonard Schmiester; Philipp Städter; et al. (Bioinform., 2023)

The Vibrotactile Paradox: Corrective and Reenforcing Feedback in Educational VR. - Fabian Fröhlich; Bruce D. Homer; Jan L. Plass (iLRN (1), 2024)

Exploring the Influence of Immersive Virtual Reality on Science Learning - An Affordance Approach. - Fabian Fröhlich; Jan L. Plass; Bruce D. Homer (iLRN (1), 2024)

Exploring Emotional Design Features for Virtual Reality Games. - Yuli Shao; Yuqi Hang; Fabian Fröhlich; Bruce D. Homer; Jan L. Plass (JCSG, 2024)

Beyond Slideshows - Investigating the Impact of Immersive Virtual Reality on Science Learning. - Fabian Fröhlich; Chris Hovey; Sameen Reza; Jan L. Plass (VR, 2024)

Can't Touch this? Why Vibrotactile Feedback Matters in Educational VR. - Fabian Fröhlich; Jan L. Plass (VR Workshops, 2024)