andi: Fast and accurate estimation of evolutionary distances between closely related genomes. - Bernhard Haubold; Fabian Klötzl; Peter Pfaffelhuber (Bioinform., 2015)

hotspot: software to support sperm-typing for investigating recombination hotspots. - Linda Odenthal-Hesse; Julien Y. Dutheil; Fabian Klötzl; Bernhard Haubold (Bioinform., 2016)

Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis. - Steffen Möller; Stuart W. Prescott; Lars Wirzenius; Petter Reinholdtsen; Brad Chapman; Pjotr Prins; Stian Soiland-Reyes; Fabian Klötzl; Andrea Bagnacani; Matús Kalas; Andreas Tille; Michael R. Crusoe (Data Sci. Eng., 2017)

Phylonium: fast estimation of evolutionary distances from large samples of similar genomes. - Fabian Klötzl; Bernhard Haubold (Bioinform., 2020)

Fur: Find unique genomic regions for diagnostic PCR. - Bernhard Haubold; Fabian Klötzl; Lars Hellberg; Daniel Thompson; Markus Cavalar (Bioinform., 2021)

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets. - Luiz Irber; N. Tessa Pierce-Ward; Mohamed Abuelanin; Harriet Alexander; Abhishek Anant; Keya Barve; Colton Baumler; Olga B. Botvinnik; Phillip Brooks; Daniel Dsouza; Gautier Laurent; Mahmudur Rahman Hera; et al. (J. Open Source Softw., 2024)