GENCODE reference annotation for the human and mouse genomes. - Adam Frankish; Mark Diekhans; Anne-Maud Ferreira; Rory Johnson; Irwin Jungreis; Jane E. Loveland; Jonathan M. Mudge; Cristina Sisu; James C. Wright; Joel Armstrong; If Barnes; Andrew E. Berry; et al. (Nucleic Acids Res., 2019)

TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements. - Fabio C. P. Navarro; Jacob Hoops; Lauren Bellfy; Eliza Cerveira; Qihui Zhu; Chengsheng Zhang; Charles Lee; Mark B. Gerstein (PLoS Comput. Biol., 2019)

Origins and characterization of variants shared between databases of somatic and germline human mutations. - William Meyerson; John Leisman; Fabio C. P. Navarro; Mark Gerstein (BMC Bioinform., 2020)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)

FANCY: fast estimation of privacy risk in functional genomics data. - Gamze Gürsoy; Charlotte M. Brannon; Fabio C. P. Navarro; Mark Gerstein (Bioinform., 2021)

GENCODE 2021. - Adam Frankish; Mark Diekhans; Irwin Jungreis; Julien Lagarde; Jane E. Loveland; Jonathan M. Mudge; Cristina Sisu; James C. Wright; Joel Armstrong; If Barnes; Andrew E. Berry; Alexandra Bignell; et al. (Nucleic Acids Res., 2021)