spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex. - Chaka Tang; Josephine F. Reyes; Fabio Luciani; Andrew R. Francis; Mark M. Tanaka (Bioinform., 2008)

The Evolutionary Dynamics of a Rapidly Mutating Virus within and between Hosts: The Case of Hepatitis C Virus. - Fabio Luciani; Samuel Alizon (PLoS Comput. Biol., 2009)

Bacteriophage evolution drives Pseudomonas aeruginosa PAO1 biofilm diversification. - Kerensa McElroy; Fabio Luciani; Janice Hui; Scott Rice; Torsten Thomas (BMC Bioinform., 2011)

Viral Quasispecies Assembly via Maximal Clique Enumeration. - Armin Töpfer; Tobias Marschall; Rowena A. Bull; Fabio Luciani; Alexander Schönhuth; Niko Beerenwinkel (PLoS Comput. Biol., 2014)

B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle. - Simone Rizzetto; David N. P. Koppstein; Jerome Samir; Mandeep Singh; Joanne H. Reed; Curtis H. Cai; Andrew R. Lloyd; Auda A. Eltahla; Christopher C. Goodnow; Fabio Luciani (Bioinform., 2018)

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity. - Mikhail Shugay; Dmitriy V. Bagaev; Ivan V. Zvyagin; Renske M. A. Vroomans; Jeremy Chase Crawford; Garry Dolton; Ekaterina Komech; Anastasiya L. Sycheva; Anna E. Koneva; Evgeniy S. Egorov; Alexey V. Eliseev; Ewald van Dyk; et al. (Nucleic Acids Res., 2018)

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium. - Dmitry V. Bagaev; Renske M. A. Vroomans; Jerome Samir; Ulrik Stervbo; Cristina Rius; Garry Dolton; Alexander Greenshields-Watson; Meriem Attaf; Evgeny S. Egorov; Ivan V. Zvyagin; Nina Babel; David K. Cole; et al. (Nucleic Acids Res., 2020)