Improving Metagenomic Assemblies Through Data Partitioning: A GC Content Approach. - Fábio Miranda 002; Cassio T. Batista; Artur Silva; Jefferson Morais; Nelson Neto 001; Rommel Ramos (IWBBIO (1), 2018)

Redundancy Treatment of NGS Contigs in Microbial Genome Finishing with Hashing-Based Approach. - Marcus de Barros Braga; Kenny Pinheiro; Fabrício Almeida Araújo; Fábio Miranda 002; Artur Silva; Rommel Ramos (BSB, 2020)

CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance. - Alice Wittig; Fábio Miranda 002; Martin Hölzer; Tom Altenburg; Jakub M. Bartoszewicz; Sebastian Beyvers; Marius A. Dieckmann; Ulrich Genske; Sven H. Giese; Melania Nowicka; Hugues Richard; Henning Schiebenhoefer; et al. (Bioinform., 2022)

HiClass: a Python Library for Local Hierarchical Classification Compatible with Scikit-learn. - Fábio Malcher Miranda; Niklas Köhnecke; Bernhard Y. Renard (J. Mach. Learn. Res., 2023)

Hitac: a hierarchical taxonomic classifier for fungal ITS sequences compatible with QIIME2. - Fábio Malcher Miranda; Vasco Ariston de Carvalho Azevedo; Rommel Thiago Juca Ramos; Bernhard Y. Renard; Vitor Piro (BMC Bioinform., 2024)