RandomBlast a tool to generate random "never born protein" sequences. - Giuseppe Evangelista; Giovanni Minervini; Pier Luigi Luisi; Fabio Polticelli (Bio Algorithms Med Syst., 2007)

High throughput protein structure prediction in a grid environment. - Giovanni Minervini; Giuseppe La Rocca; Pier Luigi Luisi; Fabio Polticelli (Bio Algorithms Med Syst., 2007)

Massive non-natural proteins structure prediction using grid technologies. - Giovanni Minervini; Giuseppe Evangelista; Laura Villanova; Debora Slanzi; Davide De Lucrezia; Irene Poli; Pier Luigi Luisi; Fabio Polticelli (BMC Bioinform., 2009)

Experimentation of an automatic resolution method for protein abbreviations in full-text papers. - Paolo Atzeni; Fabio Polticelli; Daniele Toti (BCB, 2011)

An Automatic Identification and Resolution System for Protein-Related Abbreviations in Scientific Papers. - Paolo Atzeni; Fabio Polticelli; Daniele Toti (EvoBio, 2011)

A framework for semi-automatic identification, disambiguation and storage of protein-related abbreviations in scientific literature. - Paolo Atzeni; Fabio Polticelli; Daniele Toti (ICDE Workshops, 2011)

Automatic Discovery and Resolution of Protein Abbreviations from Full-Text Scientific Papers: A Light-Weight Approach Towards Data Extraction from Unstructured Biological Sources (Extended Abstract). - Paolo Atzeni; Fabio Polticelli; Daniele Toti (SEBD, 2011)

Ab initio protein structure prediction - the hydrophobicity distribution analysis. - Giuseppe Evangelista; Giovanni Minervini; Fabio Polticelli; Maciej Malawski; Tomasz Szepieniec; Lukasz Flis; Katarzyna Prymula; Marek Kochanczyk; Ewa Matczynska; Zdzislaw Wisniowski; Kinga Salapa; Mateusz Banach; et al. (Bio Algorithms Med Syst., 2011)

Knowledge Discovery from Textual Sources by using Semantic Similarity. - Paolo Atzeni; Fabio Polticelli; Daniele Toti (SEBD, 2012)

A Knowledge Discovery Methodology for Semantic Categorization of Unstructured Textual Sources. - Daniele Toti; Paolo Atzeni; Fabio Polticelli (SITIS, 2012)

Automatic Protein Abbreviations Discovery and Resolution from Full-Text Scientific Papers: The PRAISED Framework. - Daniele Toti; Paolo Atzeni; Fabio Polticelli (Bio Algorithms Med Syst., 2012)

ASSIST: a fast versatile local structural comparison tool. - Silvia Caprari; Daniele Toti; Le Viet Hung; Maurizio Di Stefano; Fabio Polticelli (Bioinform., 2014)

LIBRA: LIgand Binding site Recognition Application. - Le Viet Hung; Silvia Caprari; Massimiliano Bizai; Daniele Toti; Fabio Polticelli (Bioinform., 2015)

Molecular models of human visual pigments: insight into the atomic bases of spectral tuning. - Francesca Centola; Fabio Polticelli (Bio Algorithms Med Syst., 2016)

The human iron exporter ferroportin. Insight into the transport mechanism by molecular modeling. - Valentina Tortosa; Maria Carmela Bonaccorsi di Patti; Giovanni Musci; Fabio Polticelli (Bio Algorithms Med Syst., 2016)

In silico study of the structure and function of Streptococcus mutans plasmidic proteins. - Silvia Caprari; Giovanni Minervini; Valentina Brandi; Fabio Polticelli (Bio Algorithms Med Syst., 2017)

An improved structural model of the human iron exporter ferroportin. Insight into the role of pathogenic mutations in hereditary hemochromatosis type 4. - Valentina Tortosa; Maria Carmela Bonaccorsi di Patti; Valentina Brandi; Giovanni Musci; Fabio Polticelli (Bio Algorithms Med Syst., 2017)

DockingApp: a user friendly interface for facilitated docking simulations with AutoDock Vina. - Elena Di Muzio; Daniele Toti; Fabio Polticelli (J. Comput. Aided Mol. Des., 2017)

Protein-ligand binding site detection as an alternative route to molecular docking and drug repurposing. - Daniele Toti; Gabriele Macari; Fabio Polticelli (Bio Algorithms Med Syst., 2018)

LIBRA-WA: a web application for ligand binding site detection and protein function recognition. - Daniele Toti; Le Viet Hung; Valentina Tortosa; Valentina Brandi; Fabio Polticelli (Bioinform., 2018)

Computational methods and tools for binding site recognition between proteins and small molecules: from classical geometrical approaches to modern machine learning strategies. - Gabriele Macari; Daniele Toti; Fabio Polticelli (J. Comput. Aided Mol. Des., 2019)

Computational studies of the mitochondrial carrier family SLC25. Present status and future perspectives. - Andrea Pasquadibisceglie; Fabio Polticelli (Bio Algorithms Med Syst., 2021)

FGDB: a comprehensive graph database of ligand fragments from the Protein Data Bank. - Daniele Toti; Gabriele Macari; Enrico Barbierato; Fabio Polticelli (Database J. Biol. Databases Curation, 2022)