Demoting redundant features to improve the discriminatory ability in cancer data. - Melanie Osl; Stephan Dreiseitl; Fabio Ribeiro Cerqueira; Michael Netzer; Bernhard Pfeifer; Christian Baumgartner (J. Biomed. Informatics, 2009)

Immune system simulation: Modeling the mast cell. - Charles Cassio Da Silva; Alcione de Paiva Oliveira; Maurilio De Araujo Possi; Fabio Ribeiro Cerqueira; Andreia Patricia Gomes; Luiz Alberto Santana; Rodrigo Siqueira-Batista (BIBM, 2012)

Theoretical Basis of a New Method for DNA Fragment Assembly in k-mer Graphs. - Adriano Donato Couto; Fabio Ribeiro Cerqueira; Rafael Luciano Guerra; Luciana Brugiolo Gonçalves; Carlos de Castro Goulart; Rodrigo Siqueira-Batista; Ricardo dos Santos Ferreira 001; Alcione de Paiva Oliveira (SCCC, 2012)

Predicting the Occurrence of Sepsis by In Silico Simulation. - Flávio Oliveira de Sousa; Alcione de Paiva Oliveira; Luiz Alberto Santana; Fabio Ribeiro Cerqueira; Rodrigo Siqueira-Batista; Andreia Patricia Gomes (MICAI (2), 2014)

NICeSim: An open-source simulator based on machine learning techniques to support medical research on prenatal and perinatal care decision making. - Fabio Ribeiro Cerqueira; Tiago Geraldo Ferreira; Alcione de Paiva Oliveira; Douglas Adriano Augusto; Eduardo Krempser; Helio José Corrêa Barbosa; Sylvia do Carmo Castro Franceschini; Brunnella Alcantara Chagas de Freitas; Andreia Patricia Gomes; Rodrigo Siqueira-Batista (Artif. Intell. Medicine, 2014)

Hardware Architecture Benchmarking for Simulation of Human Immune System by Multi-agent Systems. - Fábio Rodrigues Martins; Alcione de Paiva Oliveira; Ricardo dos Santos Ferreira 001; Fabio Ribeiro Cerqueira (EUMAS/AT, 2015)

Proposal of a New Method for de Novo DNA Sequence Assembly Using de Bruijn Graphs. - Adriano Donato Couto; Fabio Ribeiro Cerqueira; Ricardo dos Santos Ferreira 001; Alcione de Paiva Oliveira (ISCIS, 2015)

Ontological aspects in the formalisation of the FrameNet inheritance relationship. - Alexandra Moreira; Alcione de Paiva Oliveira; Maria Margarida Salomão; Fabio Ribeiro Cerqueira (Int. J. Metadata Semant. Ontologies, 2015)

GReMLIN: A Graph Mining Strategy to Infer Protein-Ligand Interaction Patterns. - Charles Abreu Santana; Fabio Ribeiro Cerqueira; Carlos Henrique da Silveira; Alexandre V. Fassio; Raquel Cardoso de Melo Minardi; Sabrina de Azevedo Silveira (BIBE, 2016)

Multiagent-Based Simulation of the Human Immune System: A Study of the Immune Response and Antimicrobial Therapy in Post-streptococcal Glomerulonephritis. - Carlos Antonio Bastos; Alcione de Paiva Oliveira; Fabio Ribeiro Cerqueira; Maurilio De Araujo Possi; Rodrigo Siqueira-Batista; Andreia Patricia Gomes; Luiz Alberto Santana (FLAIRS, 2016)

A Multiagent-based Simulation of the Infection of the Macrophage by Trypanosoma Cruzi in the Acute Phase of Chagas' Disease: Influence of the Initial Inoculum and Protozoan Escape Factor. - Willian Cordeiro Farago; Alcione de Paiva Oliveira; Rodrigo Siqueira-Batista; Andreia Patricia Gomes; Juliana Lopes Rangel Fietto; Fabio Ribeiro Cerqueira; Luiz Alberto Santana (ICEIS (2), 2016)

Patient-Specific Epilepsy Seizure Detection Using Random Forest Classification over One-Dimension Transformed EEG Data. - Marco A. Pinto-Orellana; Fabio Ribeiro Cerqueira (ISDA, 2016)

MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm. - Fabio Ribeiro Cerqueira; Adilson Mendes Ricardo; Alcione de Paiva Oliveira; Armin Graber; Christian Baumgartner (BMC Bioinform., 2016)

Mirnacle: machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction. - Yuri Bento Marques; Alcione de Paiva Oliveira; Ana Tereza Ribeiro de Vasconcelos; Fabio Ribeiro Cerqueira (BMC Bioinform., 2016)

Investigation of the visual attention role in clinical bioethics decision-making using machine learning algorithms. - Daniel Louzada Fernandes; Rodrigo Siqueira-Batista; Andreia Patricia Gomes; Camila R. Souza; Israel T. da Costa; Felippe da S. L. Cardoso; João V. de Assis; Gustavo H. L. Caetano; Fabio Ribeiro Cerqueira (ICCS, 2017)

Erratum to: Mirnacle: machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction. - Yuri Bento Marques; Alcione de Paiva Oliveira; Ana Tereza Ribeiro de Vasconcelos; Fabio Ribeiro Cerqueira (BMC Bioinform., 2017)

Geminivirus data warehouse: a database enriched with machine learning approaches. - Jose Cleydson F. Silva; Thales Francisco Mota Carvalho; Marcos F. Basso; Michihito Deguchi; Welison A. Pereira; Roberto R. Sobrinho; Pedro M. P. Vidigal; Otávio J. B. Brustolini; Fabyano F. Silva; Maximiller Dal-Bianco; Renildes L. F. Fontes; Anésia A. Santos; et al. (BMC Bioinform., 2017)

Fangorn Forest (F2): a machine learning approach to classify genes and genera in the family Geminiviridae. - Jose Cleydson F. Silva; Thales Francisco Mota Carvalho; Elizabeth P. B. Fontes; Fabio Ribeiro Cerqueira (BMC Bioinform., 2017)

An Interactive Strategy to Visualize Common Subgraphs in Protein-Ligand Interaction. - Alexandre V. Fassio; Charles Abreu Santana; Fabio Ribeiro Cerqueira; Carlos Henrique da Silveira; João P. R. Romanelli; Raquel Cardoso de Melo Minardi; Sabrina de Azevedo Silveira (IWBBIO (1), 2018)

OCCAM: prediction of small ORFs in bacterial genomes by means of a target-decoy database approach and machine learning techniques. - Fabio Ribeiro Cerqueira; Ana Tereza Ribeiro de Vasconcelos (Database J. Biol. Databases Curation, 2020)

Describing Image Focused in Cognitive and Visual Details for Visually Impaired People: An Approach to Generating Inclusive Paragraphs. - Daniel Louzada Fernandes; Marcos H. F. Ribeiro; Fabio Ribeiro Cerqueira; Michel Melo Silva (VISIGRAPP (5: VISAPP), 2022)

Presenter-Centric Image Collection and Annotation: Enhancing Accessibility for the Visually Impaired. - Luísa Ferreira; Daniel Louzada Fernandes; Fabio Ribeiro Cerqueira; Marcos Ribeiro; Michel Melo Silva (SIBGRAPI, 2023)

SiRPipe: a data mining pipeline to improve ab initio prediction of bacterial small RNAs. - Fabio Reinoso Vilca; Fabio Ribeiro Cerqueira (BIBM, 2024)