Integrated text categorisation and Information extraction using pattern matching and linguistic processing. - William J. Black; Luca Gilardoni; Fabio Rinaldi 001; Ralf Dressel (RIAO, 1997)

FACILE: Description of the NE System Used for MUC-7. - William J. Black; Fabio Rinaldi 001; David Mowatt (MUC, 1998)

CONCERTO, Conceptual Indexing, Querying and Retrieval of Digital Documents. - Elisa Bertino; Bill Black; Andrew Brasher; Vito Candela; Barbara Catania; Diana Deavin; Luigi Di Pace; Floriana Esposito; Pietro Leo; John McNaught; Andreas Persidis; Fabio Rinaldi 001; et al. (ICMCS, Vol. 2, 1999)

FACILE: Classifying Texts Integrating Pattern Matching and Information Extraction. - Fabio Ciravegna; Alberto Lavelli; Luca Gilardoni; Johannes Matiasek; Nadia Mana; Silvia Mazza; Massimo Ferraro; William J. Black; Fabio Rinaldi 001; David Mowatt (IJCAI, 1999)

CONCERTO, An Environment for the 'Intelligent' Indexing, Querying and Retrieval of Digital Documents. - Gian Piero Zarri; Elisa Bertino; Bill Black; Andrew Brasher; Barbara Catania; Diana Deavin; Luigi Di Pace; Floriana Esposito; Pietro Leo; John McNaught; Andreas Persidis; Fabio Rinaldi 001; et al. (ISMIS, 1999)

Flexible Text Classification for Financial Applications: The Facile System. - Fabio Ciravegna; Alberto Lavelli; Nadia Mana; Johannes Matiasek; Luca Gilardoni; Silvia Mazza; Massimo Ferraro; William J. Black; Fabio Rinaldi 001; David Mowatt (ECAI, 2000)

Answer Extraction in Technical Domains. - Fabio Rinaldi 001; Michael Hess 001; Diego Mollá Aliod; Rolf Schwitter; James Dowdall; Gerold Schneider; Rachel Fournier (CICLing, 2002)

Towards Answer Extraction: An application to Technical Domains. - Fabio Rinaldi 001; James Dowdall; Michael Hess 001; Diego Mollá Aliod; Rolf Schwitter (ECAI, 2002)

Technical Terminology as a Critical Resource. - James Dowdall; Michael Hess 001; Neeme Kahusk; Kaarel Kaljurand; Mare Koit; Fabio Rinaldi 001; Kadri Vider (LREC, 2002)

Exploiting Paraphrases in a Question Answering System. - Fabio Rinaldi 001; James Dowdall; Kaarel Kaljurand; Michael Hess 001; Diego Mollá Aliod (IWP@ACL, 2003)

Parmenides: An Opportunity for ISO TC37 SC4? - Fabio Rinaldi 001; James Dowdall; Michael Hess 001; Kaarel Kaljurand; Andreas Persidis (ACL (Linguistic Annotation), 2003)

Breaking the Deadlock. - Fabio Rinaldi 001; Kaarel Kaljurand; James Dowdall; Michael Hess 001 (OTM, 2003)

Knowledge-Based Question Answering. - Fabio Rinaldi 001; James Dowdall; Michael Hess 001; Diego Mollá Aliod; Rolf Schwitter; Kaarel Kaljurand (KES, 2003)

ExtrAns: Extracting Answers from Technical Texts. - Diego Mollá Aliod; Rolf Schwitter; Fabio Rinaldi 001; James Dowdall; Michael Hess 001 (IEEE Intell. Syst., 2003)

Extracción automática de respuestas para documentación técnica. - Fabio Rinaldi 001; Elia Yuste (Proces. del Leng. Natural, 2003)

Exploiting Technical Terminology for Knowledge Management. - Fabio Rinaldi 001; Elia Yuste (LSTKM@EKAW, 2004)

The Role of MultiWord Terminology in Knowledge Management. - James Dowdall; Will Lowe; Jeremy Ellman; Fabio Rinaldi 001; Michael Hess 001 (LREC, 2004)

Exploiting Language Resources for Semantic Web Annotations. - Kaarel Kaljurand; Fabio Rinaldi 001; James Dowdall; Michael Hess 001 (LREC, 2004)

Steps Towards Semantically Annotated Language Resources. - Manfred Klenner; Fabio Rinaldi 001; Michael Hess 001 (LREC, 2004)

Question Answering in Terminology-Rich Technical Domains. - Fabio Rinaldi 001; Michael Hess 001; James Dowdall; Diego Mollá Aliod; Rolf Schwitter (New Directions in Question Answering, 2004)

Coupling Information Extraction and Data Mining for Ontology Learning in PARMENIDES. - Myra Spiliopoulou; Roland M. Müller; Marko Brunzel; Fabio Rinaldi 001; Michael Hess 001; James Dowdall; William J. Black; Babis Theodoulidis; John McNaught; Luc Bernard; Gian Piero Zarri; Giorgos Orphanos; et al. (RIAO, 2004)

Relation Mining over a Corpus of Scientific Literature. - Fabio Rinaldi 001; Gerold Schneider; Kaarel Kaljurand; Michael Hess 001; Christos Andronis; Andreas Persidis; Ourania Konstanti (AIME, 2005)

Closing the Gap: Cognitively Adequate, Fast Broad-Coverage Grammatical Role Parsing. - Gerold Schneider; Fabio Rinaldi 001; Kaarel Kaljurand; Michael Hess 001 (NLUCS, 2005)

Attempto Controlled English: A Knowledge Representation Language Readable by Humans and Machines. - Norbert E. Fuchs; Stefan Höfler; Kaarel Kaljurand; Fabio Rinaldi 001; Gerold Schneider (Reasoning Web, 2005)

A symbolic approach to automatic multiword term structuring. - Eric SanJuan; James Dowdall; Fidelia Ibekwe-Sanjuan; Fabio Rinaldi 001 (Comput. Speech Lang., 2005)

Tools for Text Mining over Biomedical Literature. - Fabio Rinaldi 001; Gerold Schneider; Kaarel Kaljurand; Michael Hess 001 (ECAI, 2006)

An environment for relation mining over richly annotated corpora: the case of GENIA. - Fabio Rinaldi 001; Gerold Schneider; Kaarel Kaljurand; Michael Hess 001; Martin Romacker (BMC Bioinform., 2006)

Pro3Gres Parser in the CoNLL Domain Adaptation Shared Task. - Gerold Schneider; Kaarel Kaljurand; Fabio Rinaldi 001; Tobias Kuhn (EMNLP-CoNLL, 2007)

Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach. - Fabio Rinaldi 001; Gerold Schneider; Kaarel Kaljurand; Michael Hess 001; Christos Andronis; Ourania Konstanti; Andreas Persidis (Artif. Intell. Medicine, 2007)

Dependency-Based Relation Mining for Biomedical Literature. - Fabio Rinaldi 001; Gerold Schneider; Kaarel Kaljurand; Michael Hess 001 (LREC, 2008)

Using Existing Biomedical Resources to Detect and Ground Terms in Biomedical Literature. - Kaarel Kaljurand; Fabio Rinaldi 001; Thomas Kappeler; Gerold Schneider (AIME, 2009)

UZurich in the BioNLP 2009 Shared Task. - Kaarel Kaljurand; Gerold Schneider; Fabio Rinaldi 001 (BioNLP@HLT-NAACL (Shared Task), 2009)

TX Task: Automatic Detection of Focus Organisms in Biomedical Publications. - Thomas Kappeler; Kaarel Kaljurand; Fabio Rinaldi 001 (BioNLP@HLT-NAACL, 2009)

Detecting Protein-Protein Interactions in Biomedical Texts Using a Parser and Linguistic Resources. - Gerold Schneider; Kaarel Kaljurand; Fabio Rinaldi 001 (CICLing, 2009)

Support tools for literature-based information access in molecular biology. - Fabio Rinaldi 001; Dietrich Rebholz-Schuhmann (IUCS, 2009)

OntoGene in BioCreative II.5. - Fabio Rinaldi 001; Gerold Schneider; Kaarel Kaljurand; Simon Clematide; Thérèse Vachon; Martin Romacker (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

An Incremental Model for the Coreference Resolution Task of BioNLP 2011. - Don Tuggener; Manfred Klenner; Gerold Schneider; Simon Clematide; Fabio Rinaldi 001 (BioNLP@ACL (Shared Task), 2011)

Ranking Interactions for a Curation Task. - Simon Clematide; Fabio Rinaldi 001 (ICMLA (2), 2011)

Terminological resources for text mining over biomedical scientific literature. - Fabio Rinaldi 001; Kaarel Kaljurand; Rune Sætre (Artif. Intell. Medicine, 2011)

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. - Dietrich Rebholz-Schuhmann; Antonio Jimeno-Yepes; Chen Li 011; Senay Kafkas; Ian Lewin; Ning Kang 002; Peter T. Corbett; David Milward; Ekaterina Buyko; Elena Beisswanger; Kerstin Hornbostel; Alexandre Kouznetsov; et al. (J. Biomed. Semant., 2011)

Towards mature use of semantic resources for biomedical analyses. - Dietrich Rebholz-Schuhmann; Fabio Rinaldi 001; Sampo Pyysalo; Nigel Collier; Udo Hahn (J. Biomed. Semant., 2011)

BioCreative III interactive task: an overview. - Cecilia N. Arighi; Phoebe M. Roberts; Shashank Agarwal; Sanmitra Bhattacharya; Gianni Cesareni; Andrew Chatr-aryamontri; Simon Clematide; Pascale Gaudet; Michelle G. Giglio; Ian Harrow; Eva Huala; Martin Krallinger; et al. (BMC Bioinform., 2011)

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. - Martin Krallinger; Miguel Vazquez; Florian Leitner; David Salgado; Andrew Chatr-aryamontri; Andrew G. Winter; Livia Perfetto; Leonardo Briganti; Luana Licata; Marta Iannuccelli; Luisa Castagnoli; Gianni Cesareni; et al. (BMC Bioinform., 2011)

The gene normalization task in BioCreative III. - Zhiyong Lu; Hung-Yu Kao; Chih-Hsuan Wei; Minlie Huang; Jingchen Liu; Cheng-Ju Kuo; Chun-Nan Hsu; Richard Tzong-Han Tsai; Hong-Jie Dai; Naoaki Okazaki; Han-Cheol Cho; Martin Gerner; et al. (BMC Bioinform., 2011)

Detection of interaction articles and experimental methods in biomedical literature. - Gerold Schneider; Simon Clematide; Fabio Rinaldi 001 (BMC Bioinform., 2011)

Term Evolution: Use of Biomedical Terminologies. - Gintare Grigonyte; Fabio Rinaldi 001; Martin Volk 001 (AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text, 2012)

Notes about the OntoGene Pipeline. - Fabio Rinaldi 001; Simon Clematide; Gerold Schneider; Gintare Grigonyte (AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text, 2012)

Change of Biomedical Domain Terminology Over Time. - Gintare Grigonyte; Fabio Rinaldi 001; Martin Volk 001 (Baltic HLT, 2012)

Dependency parsing for interaction detection in pharmacogenomics. - Gerold Schneider; Fabio Rinaldi 001; Simon Clematide (LREC, 2012)

Using biomedical databases as knowledge sources for large-scale text mining. - Fabio Rinaldi 001 (E-LKR, 2012)

Using ODIN for a PharmGKB revalidation experiment. - Fabio Rinaldi 001; Simon Clematide; Yael Garten; Michelle Whirl Carrillo; Li Gong; Joan M. Hebert; Katrin Sangkuhl; Caroline F. Thorn; Teri E. Klein; Russ B. Altman (Database J. Biol. Databases Curation, 2012)

Ranking relations between diseases, drugs and genes for a curation task. - Simon Clematide; Fabio Rinaldi 001 (J. Biomed. Semant., 2012)

Relation mining experiments in the pharmacogenomics domain. - Fabio Rinaldi 001; Gerold Schneider; Simon Clematide (J. Biomed. Informatics, 2012)

UZH in BioNLP 2013. - Gerold Schneider; Simon Clematide; Tilia Ellendorff; Don Tuggener; Fabio Rinaldi 001; Gintare Grigonyte (BioNLP@ACL (Shared Task), 2013)

Exploiting BabelNet for Multilingual Biomedical Synonym Expansion. - Simon Clematide; Martin Davtyan; Fabio Rinaldi 001; Dietrich Rebholz-Schuhmann (CLEF (Working Notes), 2013)

Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview. - Dietrich Rebholz-Schuhmann; Simon Clematide; Fabio Rinaldi 001; Senay Kafkas; Erik M. van Mulligen; Quoc-Chinh Bui; Johannes Hellrich; Ian Lewin; David Milward; Michael Poprat; Antonio Jimeno-Yepes; Udo Hahn; et al. (CLEF, 2013)

Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge. - Dietrich Rebholz-Schuhmann; Simon Clematide; Fabio Rinaldi 001; Senay Kafkas; Erik M. van Mulligen; Quoc-Chinh Bui; Johannes Hellrich; Ian Lewin; David Milward; Michael Poprat; Antonio Jimeno-Yepes; Udo Hahn; et al. (CLEF (Working Notes), 2013)

Assisted editing in the biomedical domain: motivation and challenges. - Fabio Rinaldi 001 (ACM Symposium on Document Engineering, 2013)

BioC: a minimalist approach to interoperability for biomedical text processing. - Donald C. Comeau; Rezarta Islamaj Dogan; Paolo Ciccarese; Kevin Bretonnel Cohen; Martin Krallinger; Florian Leitner; Zhiyong Lu; Yifan Peng 002; Fabio Rinaldi 001; Manabu Torii; Alfonso Valencia; Karin Verspoor; et al. (Database J. Biol. Databases Curation, 2013)

Using the OntoGene pipeline for the triage task of BioCreative 2012. - Fabio Rinaldi 001; Simon Clematide; Simon Hafner; Gerold Schneider; Gintare Grigonyte; Martin Romacker; Thérèse Vachon (Database J. Biol. Databases Curation, 2013)

Text Mining Technologies for Database Curation. - Fabio Rinaldi 001 (KDIR, 2014)

Using Large Biomedical Databases as Gold Annotations for Automatic Relation Extraction. - Tilia Ellendorff; Fabio Rinaldi 001; Simon Clematide (LREC, 2014)

Semi-Automated Semantic Annotation of the Biomedical Literature. - Fabio Rinaldi 001 (ISWC (Posters & Demos), 2014)

BioC interoperability track overview. - Donald C. Comeau; Riza Theresa Batista-Navarro; Hong-Jie Dai; Rezarta Islamaj Dogan; Antonio Jimeno-Yepes; Ritu Khare; Zhiyong Lu; Hernani Marques; Carolyn J. Mattingly; Mariana L. Neves; Yifan Peng 002; Rafal Rak; et al. (Database J. Biol. Databases Curation, 2014)

Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12. - Socorro Gama-Castro; Fabio Rinaldi 001; Alejandra López-Fuentes; Yalbi Itzel Balderas-Martínez; Simon Clematide; Tilia Renate Ellendorff; Alberto Santos-Zavaleta; Hernani Marques-Madeira; Julio Collado-Vides (Database J. Biol. Databases Curation, 2014)

BioC implementations in Go, Perl, Python and Ruby. - Wanli Liu; Rezarta Islamaj Dogan; Dongseop Kwon; Hernani Marques; Fabio Rinaldi 001; W. John Wilbur; Donald C. Comeau (Database J. Biol. Databases Curation, 2014)

OntoGene web services for biomedical text mining. - Fabio Rinaldi 001; Simon Clematide; Hernani Marques; Tilia Ellendorff; Martin Romacker; Raul Rodriguez-Esteban (BMC Bioinform., 2014)

Large-scale Information Extraction for Assisted Curation of the Biomedical Literature. - Fabio Rinaldi 001; Lenz Furrer; Simon Clematide (IT@LIA@AI*IA, 2015)

A Combined Resource of Biomedical Terminology and its Statistics. - Tilia Renate Ellendorff; Adrian Van der Lek; Lenz Furrer; Fabio Rinaldi 001 (TIA, 2015)

Constructing a Syndromic Terminology Resource for Veterinary Text Mining. - Lenz Furrer; Susanne Küker; John Berezowski; Horst Posthaus; Flavie Vial; Fabio Rinaldi 001 (TIA, 2015)

An Approach towards Semi-automated Biomedical Literature Curation and Enrichment for a Major Biological Database. - Fabio Rinaldi 001; Oscar Lithgow-Serrano; Alejandra López-Fuentes; Socorro Gama-Castro; Yalbi I. Balderas-Martínez; Hilda Solano-Lira; Julio Collado-Vides (Polibits, 2015)

Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types. - Dina Vishnyakova; Raul Rodriguez-Esteban; Khan Ozol; Fabio Rinaldi 001 (BioTxtM@COLING 2016, 2016)

The PsyMine Corpus - A Corpus annotated with Psychiatric Disorders and their Etiological Factors. - Tilia Ellendorff; Simon Foster 003; Fabio Rinaldi 001 (LREC, 2016)

Using a Hybrid Approach for Entity Recognition in the Biomedical Domain. - Marco Basaldella; Lenz Furrer; Nico Colic; Tilia Ellendorff; Carlo Tasso; Fabio Rinaldi 001 (SMBM, 2016)

BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language. - Fabio Rinaldi 001; Tilia Renate Ellendorff; Sumit Madan; Simon Clematide; Adrian Van der Lek; Heinz-Theodor Mevissen; Juliane Fluck (Database J. Biol. Databases Curation, 2016)

Overview of the interactive task in BioCreative V. - Qinghua Wang 003; Shabbir Syed-Abdul; Lara Almeida; Sophia Ananiadou; Yalbi I. Balderas-Martínez; Riza Batista-Navarro; David Campos 001; Lucy Chilton; Hui-Jou Chou; Gabriela Contreras; Laurel Cooper; Hong-Jie Dai; et al. (Database J. Biol. Databases Curation, 2016)

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond. - Socorro Gama-Castro; Heladia Salgado; Alberto Santos-Zavaleta; Daniela Ledezma-Tejeida; Luis Muñiz-Rascado; Jair Santiago García-Sotelo; Kevin Alquicira-Hernández; Irma Martínez-Flores; Lucia Pannier; Jaime Abraham Castro-Mondragón; Alejandra Medina-Rivera; Hilda Solano-Lira; et al. (Nucleic Acids Res., 2016)

Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis. - Yalbi Itzel Balderas-Martínez; Fabio Rinaldi 001; Gabriela Contreras; Hilda Solano-Lira; Mishael Sánchez-Pérez; Julio Collado-Vides; Moisés Selman; Annie Pardo (Database J. Biol. Databases Curation, 2017)

Strategies towards digital and semi-automated curation in RegulonDB. - Fabio Rinaldi 001; Oscar Lithgow-Serrano; Socorro Gama-Castro; Hilda Solano-Lira; Alejandra López-Fuentes; Luis Muñiz-Rascado; Cecilia Ishida-Gutiérrez; Carlos-Francisco Méndez-Cruz; Julio Collado-Vides (Database J. Biol. Databases Curation, 2017)

Erratum: Strategies towards digital and semi-automated curation in RegulonDB. - Fabio Rinaldi 001; Oscar Lithgow-Serrano; Socorro Gama-Castro; Hilda Solano-Lira; Alejandra López-Fuentes; Luis Muñiz-Rascado; Cecilia Ishida-Gutiérrez; Carlos-Francisco Méndez-Cruz; Julio Collado-Vides (Database J. Biol. Databases Curation, 2017)

Entity recognition in the biomedical domain using a hybrid approach. - Marco Basaldella; Lenz Furrer; Carlo Tasso; Fabio Rinaldi 001 (J. Biomed. Semant., 2017)

Learning Representations for Biomedical NER. - Ivano Lauriola; Riccardo Sella; Fabio Aiolli; Alberto Lavelli; Fabio Rinaldi 001 (NL4AI@AI*IA, 2018)

Learning Preferences for Large Scale Multi-label Problems. - Ivano Lauriola; Mirko Polato; Alberto Lavelli; Fabio Rinaldi 001; Fabio Aiolli (ICANN (1), 2018)

UZH@SMM4H: System Descriptions. - Tilia Ellendorff; Joseph Cornelius; Heath Gordon; Nicola Colic; Fabio Rinaldi 001 (SMM4H@EMNLP, 2018)

UZH@CRAFT-ST: a Sequence-labeling Approach to Concept Recognition. - Lenz Furrer; Joseph Cornelius; Fabio Rinaldi 001 (BioNLP-OST@EMNLP-IJNCLP, 2019)

Approaching SMM4H with Merged Models and Multi-task Learning. - Tilia Ellendorff; Lenz Furrer; Nicola Colic; Noëmi Aepli; Fabio Rinaldi 001 (SMM4H@ACL, 2019)

Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review. - Seyedmostafa Sheikhalishahi; Riccardo Miotto; Joel T. Dudley; Alberto Lavelli; Fabio Rinaldi 001; Venet Osmani (CoRR, 2019)

A new approach and gold standard toward author disambiguation in MEDLINE. - Dina Vishnyakova; Raul Rodriguez-Esteban; Fabio Rinaldi 001 (J. Am. Medical Informatics Assoc., 2019)

OGER++: hybrid multi-type entity recognition. - Lenz Furrer; Anna Jancso; Nicola Colic; Fabio Rinaldi 001 (J. Cheminformatics, 2019)

Annotating the Pandemic: Named Entity Recognition and Normalisation in COVID-19 Literature. - Nico Colic; Lenz Furrer; Fabio Rinaldi 001 (NLP4COVID@EMNLP, 2020)

Exploring the feature space of character-level embeddings. - Ivano Lauriola; Stefano Campese; Alberto Lavelli; Fabio Rinaldi 001; Fabio Aiolli (ESANN, 2020)

Automated Detection of Adverse Drug Events from Older Patients' Electronic Medical Records Using Text Mining. - Nicola Colic; Patrick Beeler; Chantal Csajka; Vasiliki Foufi; Frederic Gaspar; Marie-Annick Le Pogam; Angela Lisibach; Christian Lovis; Monika Lutters; Fabio Rinaldi 001 (ICPR Workshops (1), 2020)

SST-BERT at SemEval-2020 Task 1: Semantic Shift Tracing by Clustering in BERT-based Embedding Spaces. - Vani Kanjirangat; Sandra Mitrovic; Alessandro Antonucci 001; Fabio Rinaldi 001 (SemEval@COLING, 2020)

COVID-19 Twitter Monitor: Aggregating and Visualizing COVID-19 Related Trends in Social Media. - Joseph Cornelius; Tilia Ellendorff; Lenz Furrer; Fabio Rinaldi 001 (SMM4H@COLING, 2020)

Cross-lingual Transfer-learning Approach to Negation Scope Resolution. - Anastassia Shaitarova; Lenz Furrer; Lena Hettinger; Fabio Rinaldi 001 (SwissText/KONVENS, 2020)

RBF Solver for Quaternions Interpolation. - Fabio Rinaldi 001; Daniele Dolci (CoRR, 2020)

Negation typology and general representation models for cross-lingual zero-shot negation scope resolution in Russian, French, and Spanish. - Anastassia Shaitarova; Fabio Rinaldi 001 (NAACL-HLT (Student Research Workshop), 2021)

Approaching SMM4H with auto-regressive language models and back-translation. - Joseph Cornelius; Tilia Ellendorff; Fabio Rinaldi 001 (SMM4H@NAACL-HLT, 2021)

Learning adaptive representations for entity recognition in the biomedical domain. - Ivano Lauriola; Fabio Aiolli; Alberto Lavelli; Fabio Rinaldi 001 (J. Biomed. Semant., 2021)

Parallel sequence tagging for concept recognition. - Lenz Furrer; Joseph Cornelius; Fabio Rinaldi 001 (BMC Bioinform., 2021)

MultiGBS: A multi-layer graph approach to biomedical summarization. - Ensieh Davoodijam; Nasser Ghadiri; Maryam Lotfi Shahreza; Fabio Rinaldi 001 (J. Biomed. Informatics, 2021)

Enhancing Biomedical Relation Extraction with Transformer Models using Shortest Dependency Path Features and Triplet Information. - Vani Kanjirangat; Fabio Rinaldi 001 (J. Biomed. Informatics, 2021)

mattica@SMM4H'22: Leveraging sentiment for stance & premise joint learning. - Oscar Lithgow-Serrano; Joseph Cornelius; Fabio Rinaldi 001; Ljiljana Dolamic (SMM4H@COLING, 2022)

Early Guessing for Dialect Identification. - Vani Kanjirangat; Tanja Samardzic; Fabio Rinaldi 001; Ljiljana Dolamic (EMNLP (Findings), 2022)

Leveraging Token-Based Concept Information and Data Augmentation in Few-Resource NER: ZuKyo-EN at the NTCIR-16 Real-MedNLP task. - Joseph Cornelius; Oscar Lithgow-Serrano; Vani Kanjirangat; Fabio Rinaldi 001; Koji Fujimoto; Mizuho Nishio; Osamu Sugiyama; Kana Ichikawa; Farhad Nooralahzadeh; Aron N. Horvath; Michael Krauthammer (NTCIR, 2022)

Approach for Named Entity Recognition and Case Identification Implemented by ZuKyo-JA Sub-team at the NTCIR-16 Real-MedNLP Task. - Koji Fujimoto; Mizuho Nishio; Osamu Sugiyama; Kana Ichikawa; Joseph Cornelius; Oscar Lithgow-Serrano; Vani Kanjirangat; Fabio Rinaldi 001; Aron N. Horvath; Farhad Nooralahzadeh; Michael Krauthammer (NTCIR, 2022)

NLP DI at NADI Shared Task Subtask-1: Sub-word Level Convolutional Neural Models and Pre-trained Binary Classifiers for Dialect Identification. - Vani Kanjirangat; Tanja Samardzic; Ljiljana Dolamic; Fabio Rinaldi 001 (WANLP@EMNLP, 2022)

An annotated dataset for extracting gene-melanoma relations from scientific literature. - Roberto Zanoli; Alberto Lavelli; Theresa Löffler; Nicolas Andres Perez Gonzalez; Fabio Rinaldi 001 (J. Biomed. Semant., 2022)

Revisiting the decay of scientific email addresses. - Raul Rodriguez-Esteban; Dina Vishnyakova; Fabio Rinaldi 001 (J. Assoc. Inf. Sci. Technol., 2022)

Boosting Radiology Report Generation by Infusing Comparison Prior. - Sanghwan Kim; Farhad Nooralahzadeh; Morteza Rohanian; Koji Fujimoto; Mizuho Nishio; Ryo Sakamoto; Fabio Rinaldi 001; Michael Krauthammer (BioNLP@ACL, 2023)

Classification of cancer TNM stage from Japanese radiology report using on-premise LLM at NTCIR-17 MedNLP-SC RR-TNM subtask. - Koji Fujimoto; Mizuho Nishio; Chikako Tanaka; Morteza Rohanian; Farhad Nooralahzadeh; Michael Krauthammer; Fabio Rinaldi 001 (NTCIR, 2023)

Zero-shot classification of TNM staging for Japanese radiology report using ChatGPT at RR-TNM subtask of NTCIR-17 MedNLP-SC. - Mizuho Nishio; Hidetoshi Matsuo; Takaaki Matsunaga; Koji Fujimoto; Morteza Rohanian; Farhad Nooralahzadeh; Fabio Rinaldi 001; Michael Krauthammer (NTCIR, 2023)

Optimizing the Size of Subword Vocabularies in Dialect Classification. - Vani Kanjirangat; Tanja Samardzic; Ljiljana Dolamic; Fabio Rinaldi 001 (VarDial@EACL, 2023)

BUST: Benchmark for the evaluation of detectors of LLM-Generated Text. - Joseph Cornelius; Oscar Lithgow-Serrano; Sandra Mitrovic; Ljiljana Dolamic; Fabio Rinaldi 001 (NAACL-HLT, 2024)

NLP_DI at NADI 2024 shared task: Multi-label Arabic Dialect Classifications with an Unsupervised Cross-Encoder. - Vani Kanjirangat; Tanja Samardzic; Ljiljana Dolamic; Fabio Rinaldi 001 (ArabicNLP, 2024)