The Difficulty of Identifying Genes in Anonymous Vertebrate Sequences. - Jean-Michel Claverie; Olivier Poirot; Fabrice Lopez (Comput. Chem., 1997)

AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation. - Vincent Le Texier; Jean-Jack M. Riethoven; Vasudev Kumanduri; Chellappa Gopalakrishnan; Fabrice Lopez; Daniel Gautheret; Thangavel Alphonse Thanaraj (BMC Bioinform., 2006)

Differential Repression of Alternative Transcripts: A Screen for miRNA Targets. - Matthieu Legendre; William Ritchie; Fabrice Lopez; Daniel Gautheret (PLoS Comput. Biol., 2006)

TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks. - Cyrille Lepoivre; Aurélie Bergon; Fabrice Lopez; Narayanan Perumal; Catherine Nguyen; Jean Imbert; Denis Puthier (BMC Bioinform., 2012)

ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments. - Jeanne Chèneby; Zacharie Ménétrier; Martin Mestdagh; Thomas Rosnet; Allyssa Douida; Wassim Rhalloussi; Aurélie Bergon; Fabrice Lopez; Benoît Ballester (Nucleic Acids Res., 2020)

ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments. - Fayrouz Hammal; Pierre de langen; Aurélie Bergon; Fabrice Lopez; Benoît Ballester (Nucleic Acids Res., 2022)

ChagasDB: 80 years of publicly available data on the molecular host response to Trypanosoma cruzi infection in a single database. - Pauline Brochet; Jean-Christophe Mouren; Laurent Hannouche; Fabrice Lopez; Benoît Ballester; Edecio Cunha-Neto; Lionel Spinelli; Christophe Chevillard (Database J. Biol. Databases Curation, 2023)